Candidatus Thiodictyon syntrophicum: THSYN_22370
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Entry
THSYN_22370 CDS
T05211
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tsy
Candidatus Thiodictyon syntrophicum
Pathway
tsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THSYN_22370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsy03019
]
THSYN_22370
03009 Ribosome biogenesis [BR:
tsy03009
]
THSYN_22370
Enzymes [BR:
tsy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
THSYN_22370
Messenger RNA biogenesis [BR:
tsy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
THSYN_22370
Ribosome biogenesis [BR:
tsy03009
]
Prokaryotic type
rRNA processing factors
THSYN_22370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AUB83420
UniProt:
A0A2K8UCW3
LinkDB
All DBs
Position
5331510..5335403
Genome browser
AA seq
1297 aa
AA seq
DB search
MLINATQPEELRVATVDGQILYNLDIESPGREQKKANIYKGTITRVEPSLEAAFVDYGAD
RHGFLPLKEISRIYFEPDTAKPGTRINIKEVVREGREVVVQIDKEERGSKGAALTTFVSL
AGRYLVLMPNNPRAGGVSRRIEGQDRSELRDVMSQLAIPDDMGLIVRTAGVGKNTEELQW
DLDYLLQLWRAIESSAAGRRAPFLIYQESDVIIRSIRDYLRVDIGEIVIDDRAVYDRAEA
FMRQVMPGNLKKLRIYQDEVPLFTRYQIESQIETAFQREVRLPSGGSIVIDHGEALTAID
INSSRATKGADIEETALNTNLEAADEIARQLRLRDLGGLFVIDFIDMTPPKNQRAVEDRL
RDALKHDRARVQVARISRFGLLEMSRQRLRPSLGDSTTSECPRCHGQGKIRGVESLALSI
LRIIEEEAMKDSSERIIAHLPVSVATFLLNEKRRAILELEARQEVQVLLLPNKHIETPDY
QIERQRSQDLTKQPDERPSYELAVLPQSVGGTHARASESTRSEEPTVKAITPTSPMPTRE
PAPEPERPDNAWTARAPEREPARYADPQDPQTQDRPAAENLLKRIWTGLFAPRVEPIAQP
PIRPIDTEERANRTERPPQGGQRRPDQGQRPRGEEGRREGRRDEGRDQRPGAAAPAQGRG
EPERPRTGGRGAERQGVRPGERQTERPTERGAERPGDKPADRTTGRTPDRIAERPEDQAA
DRGAERNSGREAQRAQPRPDGARPETGEQPRERREGEPRSRRGGRGRGRRDEPGVGDEAR
AAGGQREAAPEPGREPNREPTGATPREARSPGQAPRGHQTRERTPAGPPAADQDAARERP
WTDQARHTAAGESAPDAVNPGAQPPVETLVAVSALALTEVADQSAPGDQALRTPALDAAP
VAPTPATAPVGDDTVGAFEAPAAPPHWDRDAATAERSAHQHAATTAPDPWARTAIPTAPE
EDHWDDDDYDTYPVYPTAAATDAVPAGAAGPHLTADQGAELEGDEDESDTDPGDGDDPAE
GTDAAVQDPAGRPRPRRRRGGRNRRRPGAEAARAAATDDATDETTPASAESADEPRNDLG
PRPGAPDAAPQGPVVPPQSALTPPAPGGESQRAPDGDQPGEFVAVTQPALGAVAATDAGA
PSSASDMDAGQAPAPVAETTPEAVPPPVAAAPAEPTPVAEMPADQAPPLTPTPAAAPADH
APALTPVAEAPAELTPPPVAEAPAEPAPPPTPVAEAPAEPAPPPPPVTAAPAPLADVPAE
PAPVAATTAEQLSPPAPAADAPAEQAPTPARDEHAAL
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcaacgcgactcagccggaagagttgcgcgtggcgaccgtcgatggtcaaatc
ctctataacctcgatatcgaatcccccggccgcgaacagaaaaaggccaacatttacaaa
ggcaccattacccgtgtcgagccgagcctggaggccgccttcgtcgactacggcgccgac
cgccacggcttcctgccgctgaaagaaatctcccgcatctatttcgagcccgacaccgcc
aagcccggaacccgcatcaatatcaaggaggtggtgcgcgagggccgcgaggtggtggtg
cagatcgacaaggaggagcgcggcagcaagggcgcggcgctcaccaccttcgtctcgctc
gccggccgctatctggtactgatgcccaacaacccgcgcgccggcggggtgtcgcgccgc
attgagggccaggaccgcagcgaactgcgcgatgtcatgagccagctcgccatccccgac
gacatggggctcatcgtgcgcaccgccggtgtgggcaagaacaccgaagaactccagtgg
gatctggactacctgctccagctctggcgcgcgatcgagtcgtccgctgccgggcgccgc
gcgcccttcctgatctatcaggagagcgacgtcatcatccgctccatccgtgactacctg
cgggtggacatcggcgagatcgtgatcgacgaccgggccgtctatgaccgggccgaggcc
ttcatgcgccaggtgatgccgggcaacctgaagaagctgcggatctaccaggacgaggtg
ccgctcttcacccgctaccagatcgagagccagatcgagaccgccttccagcgcgaggtg
cgcctgccctccggcggctccatcgtcatcgatcacggcgaggccctgaccgccatcgac
atcaactcctcgcgcgccaccaagggcgcggatatcgaagagacggcgctcaacaccaac
ctggaggccgccgacgagatcgcccgccagttgcgcctgcgcgacttgggcgggctcttc
gtcatcgacttcatcgatatgaccccgcccaagaaccagcgcgcggtggaagaccggctg
cgcgatgccttgaagcacgaccgcgcccgcgtccaggtggcacgcatctcccgcttcggg
ctgctggaaatgtcgcgccagcgcctgcggccgtcgctgggtgactccaccaccagcgag
tgcccgcgctgccatgggcagggcaagatccgcggcgtcgagtcgctcgcgctgtccatc
ctgcgcatcatcgaagaggaggcgatgaaggacagctcggagcgcatcatcgcccacctg
ccggtcagcgtggccaccttcctgctcaacgaaaagcgccgcgccatcctggagctcgag
gcgcgtcaggaggtccaggtcctgttgctgcccaacaagcacatcgagaccccggactat
cagatcgagcgccagcgcagccaggacctgaccaagcaacccgacgagcggcccagctac
gagctggccgtcctgccccagtcggtcggcggcacccacgcgcgggcgagcgagtcgacc
cgcagcgaagagccgacggtcaaggccatcaccccgacctcccccatgcccacgcgggaa
ccggcgcccgagccggagcggcccgataacgcctggaccgcccgcgcccccgagcgcgag
cccgcgcgctatgccgatccccaggacccccagacccaggatcgaccggccgcggaaaac
ctgctcaagcgcatctggaccgggctcttcgccccccgcgtagaacccatcgcgcagccg
cccattcgtccgatcgacaccgaggagcgggccaaccggaccgagcgcccgccgcagggc
ggccagcgccggcccgaccagggtcagcgcccgcgcggcgaagagggccgacgcgagggg
cggcgtgacgaaggtcgtgaccagcgcccgggggcggcggcacccgcccagggtcgcggc
gagccggagcgcccgcgtaccggcggtcgcggggccgagcgccaaggcgtgcggccgggc
gagcggcagactgagcggcccaccgagcgcggagccgagcgcccgggtgacaagcccgcc
gatcggaccacgggtcggaccccggatcggatcgcggaacggcccgaagaccaagcggcc
gaccggggcgccgagcgcaacagcggccgcgaggcccagcgcgcccagccgcggccggac
ggcgcgcggcccgagaccggggagcaaccgcgtgagcgccgtgagggcgagccgcgcagc
cgccgcggcggtcgcggtcgcgggcggcgtgacgagccgggggtcggcgatgaggcccgc
gccgccggtggtcagcgggaagctgcccctgagcctggtcgggagcccaaccgggagccg
accggcgcaaccccacgggaggcccggtcccccggccaggcgccgcgggggcaccagacc
cgcgagcgcaccccggcgggtccgcccgcagccgaccaggacgcggcgcgggagcggccc
tggaccgaccaggcacgccacaccgccgcgggcgaatccgccccggacgcggtgaaccct
ggcgcacagcccccggtcgagaccctggtcgcggtcagtgcgctcgccttgaccgaggtc
gccgaccagtccgcgcccggcgaccaggcactgcggacgccggccctggacgcggcaccc
gtcgccccgaccccggccaccgccccggtcggcgacgacacagtcggcgccttcgaggcc
cccgccgcgcccccgcactgggaccgggacgcggccacggccgagcgctccgcacaccag
cacgccgccaccacggcccccgacccctgggcccggaccgccatccccaccgccccggag
gaggaccactgggacgacgacgactacgacacctacccggtctatcccacggcggcggcc
actgacgcggtcccggccggtgcggccgggccgcacctcaccgccgaccagggcgcggag
ttggagggcgacgaggacgagtccgacaccgacccgggcgatggggacgaccccgccgag
ggcaccgacgcggccgtccaggacccggccggccgcccccggccccggcgtcgccgcggc
ggccgcaatcggcggcgtcccggcgccgaggccgcccgcgccgcggcgaccgacgatgcc
actgacgagacgacgccggccagcgccgagagcgccgacgaaccgcggaacgacctcggc
ccacgaccaggtgccccggacgcggcaccccaaggcccggtcgtgccgccgcagagcgct
ttgaccccgcccgcaccaggcggcgagtcccagcgcgcgccggatggcgaccagcccggc
gaattcgtcgctgtaacccagccggccttgggcgcggtcgcggccacggacgcaggggcc
ccgtcatcggccagcgacatggatgccggacaagccccggcgccggtcgccgaaacgacg
cccgaggcagtgccgcccccagtcgccgcagcgccggccgagcctacaccggtcgccgaa
atgccggccgatcaggcgccgcccctgaccccgaccccggccgcggccccggccgaccat
gcgccagccctgaccccggtcgccgaagcgcctgcggaattgacaccgcccccggtcgcc
gaagcaccggccgagcccgcaccgccaccgaccccggtcgccgaagcaccggccgagccc
gcgccacccccgcccccggtcaccgccgcgccggccccgctcgccgacgtacccgccgag
ccggcgcccgtcgccgccacgaccgcggagcaactgtcgcccccggcacccgccgctgac
gcacctgccgagcaagcaccgactccggcccgcgacgagcacgccgccctctga
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