Thiohalobacter thiocyanaticus: FOKN1_1822
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Entry
FOKN1_1822 CDS
T05229
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ttc
Thiohalobacter thiocyanaticus
Pathway
ttc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ttc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOKN1_1822
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ttc03019
]
FOKN1_1822
03009 Ribosome biogenesis [BR:
ttc03009
]
FOKN1_1822
Enzymes [BR:
ttc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FOKN1_1822
Messenger RNA biogenesis [BR:
ttc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FOKN1_1822
Ribosome biogenesis [BR:
ttc03009
]
Prokaryotic type
rRNA processing factors
FOKN1_1822
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BAZ94208
UniProt:
A0A1Z4VS86
LinkDB
All DBs
Position
complement(1926035..1928626)
Genome browser
AA seq
863 aa
AA seq
DB search
MLVNATQPEELRVAMVDGQKLYDLDIEVPSREQKKSNIYKGKITRVEPSLEAAFVDYGAD
RHGFLPLKEIARSYFSEQALSGDGRPSIKDAVREGQELVVQVEKEERGQKGAALTTFISL
AGRYLVLMPNNPRAGGVSRRIEGDDRSQVRDIMSELNIPDGMGLIVRTAGVGRSTEELQW
DLDYLLQLWSAIEGAANEGQAPFLIYQESNVIIRALRDYLRSDIGEIMIDDAQVFQRARE
FMELVMPHNLHKLKRYDDPVPLFSRYQIESQIESAFQRDVTLPSGGSIVIDHTEALLSID
INSARATKGSDIEETALNTNLEAADEVARQLRIRDLGGLIVIDFIDMSAAKHQREVENRL
KEALKMDRARVQVGRISRFGLLEMSRQRLRPSLGESSQIVCPRCNGHGTVRGVESLALSV
LRIVEENAMKEKTARVVALVPVEVATFLLNEKRKSLYEIEQRYKVNVMLIPTPSLETPNY
EVRRVRTDEVKGEQAVSSFELIPEESVEVAETGGETVTRRAEEPAVKMLVPSSPVPPPAA
EAPAPARPAAGGGQPGLLKRLWSNLFGTPEPAEETEAQEKPRKGAGDGGKGRQDSRGGRN
GGGRSRSAGGRSGGGRNKPKRQPQEAGGEKPAQDKSKGKPRSEEPRAEAKPEAKPEAKSE
AKPQAEGGAESGQARESRGSRGGRRGRRGGSGRRRSSGNRQRGESGQQQAQGDGQSEDKD
NRASAPAAGGKGGDDQSRQDAGGQNQGQSGGGQVVEMKSSQERPPAEKADKPARGEGSGS
GTAAPPAAQDKPAPKAEQPAAPKPEQAAPKPEQPAAKPEPPAPKPEQQSAPKPEQPAQAP
KADRPAGDAPASNDPAKVVGNKE
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgctagtcaatgcaactcagcccgaagagttgcgcgtggccatggtcgatggccagaaa
ctctacgatctcgacatcgaggtcccctcccgcgagcagaaaaaatccaatatctacaag
ggtaagatcacccgtgtagagcccagtctggaagcggccttcgtcgattacggcgccgac
cgccacggctttctgccgctcaaggaaatcgcccgcagctacttctccgaacaggccctg
tccggcgacggccgccccagcatcaaggatgcggtcagggaaggtcaggagttggtggtg
caggtggagaaggaggagcgcggccagaagggtgcggcgctgaccaccttcatcagcctg
gccgggcgctacctggtactgatgccgaacaacccgcgcgccgggggcgtgtcgcgccgc
atcgagggcgacgaccgcagccaggtgcgcgacatcatgtccgagctgaacatccccgac
ggcatgggcctgatcgtgcgcaccgccggcgtgggccgctccaccgaggagttgcagtgg
gacctggactacctgctccagctctggagtgcgatcgagggcgccgccaacgagggccag
gccccgttcctgatctatcaggagagcaacgtcatcatccgggccctgcgcgactacctg
cgctcggacatcggcgagatcatgatcgacgacgcccaggtgtttcagcgggcgcgcgag
ttcatggaactcgtcatgccgcacaacctgcacaagctcaagcgctacgacgatccggtg
ccgctgttctcgcgctaccagatcgagagccagatcgagtcggccttccagcgtgacgtc
accctgccctcgggcggctccatcgtcatcgaccacaccgaggcgctgctgtccatcgac
atcaactcggcgcgcgccaccaagggcagcgacatcgaggagaccgcgctcaacaccaac
ctggaggcggccgacgaggtcgcccgccagctgcgcatccgcgacctgggcgggctgatc
gtcatcgacttcatcgacatgtccgcggccaagcatcagcgcgaggtggagaaccgcctc
aaggaagcgctgaagatggaccgcgcccgggtccaggtcggacgcatctcgcgcttcggc
ctgctggagatgtcgcgacagcgcctgcggccctcgctgggcgagtccagccagatcgtc
tgcccgcgctgcaacggccacggcacggtgcgcggggtggaatccctggccctgtcggtg
ctgcgcatcgtcgaggaaaacgccatgaaggagaagaccgcgcgcgtggtggcgctggtg
ccggtcgaggtggcgaccttcctgctcaacgagaagcgcaagtcgctgtacgagatcgag
cagcgctacaaggtcaacgtcatgctcatccccaccccgtcgctggagacgccgaactac
gaggtccgacgcgtgcgcaccgacgaggtcaagggcgagcaggccgtgtccagcttcgaa
ctgatcccggaagaaagcgtggaagtggccgagaccggcggcgagaccgtgacccgccgg
gcggaagagccggccgtgaagatgctggtgccctcctccccggtgccgccgcccgctgcc
gaggccccggccccggcccgcccggcggccggcggtggtcagcccggtctgctcaagcgg
ttgtggtcgaacctgttcggcaccccggaacccgccgaggagaccgaggcgcaggagaaa
ccgcgcaagggcgccggtgacggcggcaagggacgtcaggacagccgcggcggccgcaac
ggcggcggtcgcagccgaagcgccggcggccgcagtggcggtggacgtaacaagcccaaa
cgccagccgcaggaagccggcggcgagaagccggcccaggacaagagcaagggcaagccc
aggagcgaagaaccgcgggccgaagccaagccggaagcgaagcccgaagccaaaagcgag
gccaaaccccaggccgagggcggtgccgagtcgggccaggcccgggagtcccgcggcagt
cgtggcggccggcgcggccggcgcggcggcagcggtcgacgccgttcgagcggcaaccgc
cagcgtggtgagagcggccagcagcaggcccagggcgacggccagtccgaggacaaggac
aaccgcgcatcagccccggctgctggcggcaagggcggcgacgatcagtccaggcaggat
gccggcggccagaatcagggtcagagcggcggcggtcaggtcgtggagatgaagtcatcc
caggagcggccgccggcggaaaaggccgacaagcccgcccggggtgaaggctccggcagt
ggcaccgcagccccgcccgccgcccaggacaagcccgccccgaaggcggagcagcctgct
gcaccgaagccggaacaagcggccccgaaaccggaacagcccgcagccaagccggagccg
ccggctccgaagccggagcagcagtccgcgcccaagccggagcagccggcccaggctccg
aaggccgacaggcccgcgggcgatgccccggcgtcgaacgacccggccaaggtggtgggc
aacaaggaatag
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