Tupaia chinensis (Chinese tree shrew): 102487844
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Entry
102487844 CDS
T02978
Symbol
SCN1A
Name
(RefSeq) sodium channel protein type 1 subunit alpha
KO
K04833
voltage-gated sodium channel type I alpha
Organism
tup
Tupaia chinensis (Chinese tree shrew)
Pathway
tup04728
Dopaminergic synapse
Brite
KEGG Orthology (KO) [BR:
tup00001
]
09150 Organismal Systems
09156 Nervous system
04728 Dopaminergic synapse
102487844 (SCN1A)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tup04040
]
102487844 (SCN1A)
Ion channels [BR:
tup04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
102487844 (SCN1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
PKD_channel
GPHH
ATP-synt_B
IQ
FUT8_N_cat
Pns11_12
Motif
Other DBs
NCBI-GeneID:
102487844
NCBI-ProteinID:
XP_014445281
LinkDB
All DBs
Position
Un
AA seq
2009 aa
AA seq
DB search
MEQTVLVPPGPDSFNFFTRESLAAIERRIAEEKAKNPKPDKKDDDENGPKPNSDLEAGKN
LPFIYGDIPPEMVSEPLEDLDPYYINKKTFIVLNKGKAIFRFSATSALYILTPFNPLRKI
AIKILVHSLFSMLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKIIARGFCL
EDFTFLRDPWNWLDFTVITFAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCIQWPPTNASLEEHSIEKNITVDY
NGTLINETVFEFDWKSYIQDTRYHYFLEGFLDALLCGNSSDAGQCPEGYMCVKAGRNPNY
GYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLILA
VVAMAYEEQNQATLEEAEQKEAEFQQMLEQLKKQQEAAQQAAAVTASEHSREPSAAGRLS
DSSSEASKLSSKSAKERRNRRKKRKQKEQSGGEEKDEDEFHKSESEDSIRRKGFRFSIEG
NRLTYEKRYSSPHQSLLSIRGSLFSPRRNSRTSLFSFRGRAKDVGSENDFADDEHSTFED
NESRRDSLFVPRRHGERRNSNLSQTSRSSRMLAVFPANGKMHSTVDCNGVVSLVGGPSVP
TSPVGQLLPEVIIDKPATDDNGTTTETEMRKRRSSSFHVSMDFLEDPSQRQRAMSIASIL
TNTVEELEESRQKCPPCWYKFSNIFLIWDCSPYWLKVKHIVNLVVMDPFVDLAITICIVL
NTLFMAMEHYPMTEHFNNVLTVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGWNIFDGFIV
TLSLVELGLANVEGLSVLRSFRFLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAII
VFIFAVVGMQLFGKSYKDCVCKISTSCELPRWHMNDFFHSFLIVFRVLCGEWIETMWDCM
EVAGQAMCLTVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDNEMNNLQIAVDRMH
KGVAYVKRKIYEFIQQSFVKKQKILDEIKPLDDLNNKKDSCMSNHTTEIGKDLDYLKDVN
GTTSGIGTGSSVEKYIIDESDYMSFINNPSLTVTVPIAVGESDFENLNTEDFSSESDLEE
SKEKLNESSSSSEGSTVDIGAPAEEQPVVEPEETLEPEACFTEGCVQRFKCCQISVEEGR
GKQWWNLRRTCFRIVEHNWFETFIVFMILLSSGALAFEDIYIDQRKTIKTMLEYADKVFT
YIFILEMLLKWVAYGYQTYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRA
LRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCINTT
TGDMFDISEVNNYTDCKNLMERNETARWKNVKVNFDNVGFGYLSLLQVATFKGWMDIMYA
AVDSRNVELQPKYEDSLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFM
TEEQKKYYNAMKKLGSKKPQKPIPRPGNKFQGMVFDFVTRQVFDISIMILICLNMVTMMV
ETDDQSEYVTNILSRINLVFIVLFTGECVLKLISLRHYYFTIGWNIFDFVVVILSIVGMF
LAELIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLV
MFIYAIFGMSNFAYVKREVGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSGPPD
CDPNKVNPGSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATEESAEPL
SEDDFEMFYEVWEKFDPDATQFMEFEKLSQFAAALEPPLNLPQPNKLQLIAMDLPMVSGD
RIHCLDILFAFTKRVLGESGEMDALRIQMEERFMASNPSKVSYQPITTTLKRKQEEVSAV
IIQRAYRRHLLKRTVKQASFTYNKNKIKVGANLLVKEDMIIDRINENSITEKTDITMSTA
VCPPSYDRVTKPIVEKHEQEGKDEKAKGK
NT seq
6030 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaacagtgcttgtaccaccaggacctgacagcttcaacttcttcaccagagaa
tctcttgcggctattgaaaggcgcattgcagaagaaaaggctaagaatcctaaaccagat
aaaaaagatgatgatgaaaatggtccaaagccaaatagtgacttggaagctggaaagaac
cttccatttatttatggagacattcctccagagatggtgtcagagcccttggaggacctg
gacccgtactatatcaataaaaaaacatttatagtattgaataaagggaaggccatcttc
cggttcagtgccacctccgccctgtacattttaactcccttcaatcctcttaggaaaata
gctattaagattttggtacattcattattcagcatgctaattatgtgcactattttgacg
aactgtgtgtttatgacaatgagtaacccccctgactggacaaagaatgtagagtacacc
ttcacaggaatctatacttttgaatcacttataaaaattattgcaaggggcttctgttta
gaagattttactttccttcgggatccatggaactggcttgatttcactgtcattacattt
gcatatgtgacagagtttgtggacctgggcaatgtctcagcgttgagaacattcagagtt
ctccgagcattgaaaacaatttcagtcattccaggtctgaagaccattgtgggagccctg
atccagtcagttaagaagctctcagatgtaatgatcctgactgtgttctgtttgagtgtg
tttgcactcattgggctgcaactcttcatgggcaatctacggaacaagtgcatacaatgg
cctcccaccaatgcgtccctggaggaacacagtatagagaagaatataactgtggattac
aatggcacactaataaatgaaactgtttttgagtttgactggaaatcatatattcaagat
acaagatatcattatttcctggagggttttttagatgcattactatgtggaaatagctct
gacgcaggccagtgtccagaaggatatatgtgtgtaaaagctggaagaaatcccaattat
ggctatacaagctttgataccttcagctgggcttttttgtccctgtttcgactgatgacc
caggacttctgggaaaatctttatcaactgacattacgagctgctgggaaaacatacatg
atattttttgtgctggtcattttcttgggctcattttacctaataaatttgatcctggct
gtggtggccatggcctatgaggaacagaaccaggccaccttggaagaggcagaacagaaa
gaagctgaatttcagcagatgctcgagcagctgaaaaagcaacaggaggcagctcagcaa
gcagcagcagtgactgcctcggagcattccagagagcccagtgcagcaggcaggctctca
gacagctcatcagaagcctccaagctgagttccaagagtgccaaggaaagaagaaaccgg
aggaagaaaaggaaacagaaagagcagtctgggggagaagagaaagatgaggatgaattc
cataaatccgaatctgaagacagcatcaggaggaaagggtttcgcttctccattgaaggg
aaccgactgacatatgaaaagaggtactcttccccacaccagtctttgttgagcatccgc
ggctccctattttctccaaggcgaaatagcagaacaagccttttcagctttagagggcga
gcaaaggatgtgggatctgagaatgactttgctgatgatgagcacagcacctttgaggac
aacgagagcaggagagattccttgtttgtgccccgacgacatggagagcggcgcaacagt
aacctaagtcagaccagtaggtcatcccggatgctggcagtgtttccagccaatgggaag
atgcacagcactgtggattgcaatggtgtggtttccttggttggtggaccttcagttcct
acatcgcctgttggacagcttctgccagaggtgataatagataagccagctactgatgac
aatggaacaactactgaaactgaaatgaggaagagaaggtcgagttcttttcatgtttcc
atggactttctagaggatccttcccaaaggcaaagagcaatgagtatagccagcatctta
acaaatacagtggaagaacttgaagaatccaggcagaaatgcccaccctgttggtataaa
ttttccaacatattcttaatctgggactgttctccgtattggttaaaagtgaaacatatt
gtcaacctggtcgtgatggacccatttgttgacctggccatcaccatctgcattgtctta
aatactcttttcatggccatggagcactatcccatgacggagcatttcaataatgtgctt
acagtaggaaacttggttttcactgggatctttacagcagaaatgtttctgaaaattatt
gccatggatccttactattattttcaagaaggctggaatatctttgatggctttattgtg
acgcttagcctggtagaacttggcctcgccaatgtggaaggactatcagttctccgttca
ttcagattccttcgagtgttcaagttggcaaaatcctggccaacattaaatatgctaata
aagatcatcggcaattcagtgggggctctgggaaatctaacccttgtgttggccattata
gtcttcatttttgctgtggtcggcatgcagctctttggtaaaagctacaaagattgtgtc
tgcaaaatctctacttcctgtgaacttccacgctggcacatgaatgacttcttccactcc
ttcctgattgttttccgtgtgctgtgtggagagtggatagagaccatgtgggactgtatg
gaggtcgctggtcaagccatgtgccttactgtcttcatgatggtcatggtcattggaaac
ctagtggttctgaacctctttctggccttgcttctgagctcatttagtgcagacaacctt
gcagccactgacgatgacaatgaaatgaacaatctccaaattgctgttgatagaatgcac
aaaggagtagcttatgtgaaaagaaaaatatatgaatttattcaacagtcctttgttaag
aaacaaaagattttagatgaaattaaaccacttgatgatctaaacaacaagaaagacagt
tgtatgtccaatcatacaacagaaattggaaaagatcttgactatcttaaagatgtaaat
ggaaccacaagtggcataggaactggcagcagtgttgaaaaatacattattgatgaaagt
gattacatgtcattcataaacaatcccagtcttaccgtgactgtaccaattgctgtagga
gagtctgactttgaaaatttaaacacagaagacttcagcagtgaatcggatctggaagaa
agcaaagagaaacttaatgaaagcagtagctcttcggaaggtagcactgtggatattggt
gcccctgcagaggaacagcctgtagtggaacctgaggagacccttgaacctgaagcctgt
ttcacagaaggctgtgtacaacgattcaaatgttgtcaaatcagtgtggaagaagggcga
ggaaaacaatggtggaacctgaggagaacgtgtttccgaatagttgagcataactggttc
gagaccttcattgttttcatgattctccttagcagtggtgctctggcatttgaagatata
tatattgatcaacgaaagacaattaagacaatgttggaatatgctgacaaggttttcact
tatattttcattctggaaatgcttctaaaatgggtagcatatggctatcaaacatatttc
accaatgcctggtgttggctggatttcttaattgttgatgtctcattggtcagtttaaca
gcaaatgccttgggctactcagaacttggtgccatcaaatccctcaggacactaagagct
ctgaggcctctaagagctttatcacgatttgaaggaatgagggtggttgtgaatgcccta
ttaggagcaattccatccatcatgaatgtgcttctggtttgtcttatattctggctaatt
ttcagtattatgggcgtaaatttgtttgctggcaaattctaccactgtattaacaccaca
actggtgacatgtttgacatcagcgaagtgaataattatactgattgcaaaaatctaatg
gaaagaaatgagacagcccgatggaaaaatgtgaaagtaaactttgataatgtaggattt
gggtatctctctttgcttcaagttgctacatttaagggctggatggatataatgtatgca
gcagttgattccagaaatgtggaactccagcctaagtatgaagacagtctgtacatgtat
ctttactttgtcattttcatcatctttgggtccttcttcaccttgaacttgtttattggt
gtgatcatagataatttcaaccagcaaaagaagaagtttggaggtcaagacatctttatg
acagaagaacagaagaaatactataatgcaatgaaaaaattaggatcgaaaaagccacaa
aagcctatacctcgaccaggaaacaaatttcaagggatggtctttgactttgtaaccaga
caagtttttgacataagcatcatgattctcatctgtcttaacatggtaacaatgatggtg
gaaacagatgaccaaagtgaatacgtgactaacattttgtcacgcatcaacctggtgttc
attgtgctgttcactggagagtgtgttctgaagctcatctcactccgtcattattatttt
accattggctggaatatctttgattttgtggttgtaattttatccattgtaggtatgttt
ctggctgagctgatagaaaagtatttcgtgtcccctaccctgtttcgagtgatccgtctt
gccaggattggccgcatcctgcgtctgatcaaaggagcgaaggggatccgcacgctgctc
tttgctctgatgatgtcccttcctgcgctgtttaacatcggcctcctgctcttcctggtc
atgttcatctacgccatctttggaatgtccaactttgcctatgttaagagggaagttgga
attgatgacatgttcaacttcgagacctttggcaatagcatgatctgcctgttccaaatc
accacctctgctggctgggatggattgctagcccctattcttaacagtgggcctccagac
tgtgaccctaataaagttaaccctggaagctcagttaagggagactgtgggaacccatct
gtcgggattttcttttttgtcagttacatcatcatatcctttctggtggtggtgaacatg
tacattgcggtcatcttggagaacttcagtgttgctactgaggaaagtgcagagcccctg
agtgaggatgactttgagatgttctacgaggtttgggagaagttcgatccagatgcaact
cagttcatggaatttgaaaaactatctcagtttgcagctgcccttgaacctcctctcaat
ttgccacaacctaacaaactgcagctcattgccatggatttgcccatggtcagtggtgac
cgaatccattgtcttgacatcttatttgcttttacaaagcgggttcttggagagagtgga
gagatggatgctctccgaatacagatggaagagcgatttatggcttcgaacccttccaag
gtctcctatcagccaatcactactactttaaaacgaaagcaagaggaagtatctgctgtt
attattcagcgtgcttacaggcgccatcttttaaagcgaactgtaaaacaggcttcattt
acgtataataaaaacaaaatcaaagttggggctaatcttcttgtaaaggaagatatgata
attgacagaataaatgagaactctatcacggaaaaaactgatattaccatgtccactgca
gtttgtccaccctcctatgaccgggtgacaaagccaattgtagaaaaacatgagcaagaa
ggcaaagatgaaaaagccaaagggaaataa
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integrated database retrieval system
