Thiosulfativibrio zosterae: THMIRHAT_15660
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Entry
THMIRHAT_15660 CDS
T06856
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tzo
Thiosulfativibrio zosterae
Pathway
tzo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tzo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THMIRHAT_15660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tzo03019
]
THMIRHAT_15660
03009 Ribosome biogenesis [BR:
tzo03009
]
THMIRHAT_15660
Enzymes [BR:
tzo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
THMIRHAT_15660
Messenger RNA biogenesis [BR:
tzo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
THMIRHAT_15660
Ribosome biogenesis [BR:
tzo03009
]
Prokaryotic type
rRNA processing factors
THMIRHAT_15660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BBP43820
UniProt:
A0A6F8PPA1
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All DBs
Position
1737771..1740431
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AA seq
886 aa
AA seq
DB search
MKRMLINATQAEETRIALVDGQQLYDLDVETPHHQKKKANIYKGKVTRIEQHLEAAFVDY
GSDRHGFLPFKELADEYYPNGRIDHKLTINEVLKEGQEIIVQVQKEERGNKGAALTTQIT
LAGPYVVMMPNNPKAGGISRRIEGEDRSETRDVLSDLDVPEGMGMIIRTAGVGKSTEELQ
WGVNYLVQLWEAIKSTAADKAAPMLIHQESDIVILAIRDYLRQDIGEIIIDNMEVFHKAR
EFIQHVMPHQVYKVKPYQDKVPLFTRFQIESQIETAYQREVTLPSGGVIVIDITEALTAI
DINSSRSTKGGDIEETAFHTNMEAACEIARQLRLRDLGGLVVIDFIDMHSNKHQRDVENK
MRDAVKSDRARVQIGKISRFGLLEMSRQRLRPSIEESTQVVCPRCKGVGVIRGVESLGLS
ILRLLEEESMKENTRRVTVQLPVDVATFLLNEKRSQITHIEDRHKMHILIVPNEHLSTPQ
YLIERTRINDDIPEGASYAMKEVIAKEEYAFSEPKSQQKQEEPALKGIEQMSAPAPVAVA
QVATPKKPGLLTRLWNALFSAAEEKEAQVEEQQKEVRRNSRNNNNRNRNDRNDRNRRRNN
NRNSQEGDANTDTEEKVERTDRNRNRNERPERNDAPRNDAAEGNSNPRRSRRNRKPQTPE
ALEALEQDLENNNSPLVTDDSSEKRPANERNTRYNKANEEKVEVEDSTDDNQEDTDGEEG
DKRRPRRRSRYNTRSYNGRRRAPAGAADLSIHSTMEETTETVPTESVESTNAESMTPPTD
VIAEKPETVTQVETAETTETVEAPKEAETVTETVVEAPVQATEPQVVEVAVAEPVAKMLV
ESTSEVSAPAETEAVVATEVTTPEAPISEATQTVAETSDTEEKPKV
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgctactcaagccgaagaaacccgcatcgcgctggttgac
ggccagcagctctacgacctagatgtcgaaaccccccaccaccaaaagaaaaaagccaac
atttacaaaggtaaagtcacgcgcatcgagcaacacttagaagccgcttttgtagactat
ggctcagatcgacacggttttttacccttcaaagaacttgccgacgaatactatcctaat
ggtcgcatcgaccacaaactgaccatcaatgaagtgcttaaagaaggccaagaaatcatt
gttcaggtacaaaaagaagaacgcggaaacaaaggcgcagccttaaccacgcaaatcact
ttggccggtccttatgtggttatgatgccaaacaaccccaaagcgggcggtatttctcgt
cgtattgaaggcgaagaccgcagtgaaacgcgtgatgttctgtcagacctagatgtgcca
gaaggcatgggcatgattatccgtaccgcaggtgtgggtaaatcgactgaagaattgcaa
tggggcgttaactaccttgtgcaactttgggaagccattaaatcaaccgcagccgataaa
gccgcaccgatgttgattcaccaagaatcagacatcgtcattttggcgattcgcgattac
ctgcgccaagacattggtgaaatcattatcgacaatatggaagtgttccataaagcgcgt
gaattcattcaacatgttatgccgcaccaagtttataaagtgaaaccttaccaagacaag
gtgcctttatttacgcgcttccaaattgaatcacaaattgaaaccgcctatcagcgcgaa
gtcaccttgccttctggcggcgtgatcgtgattgatatcaccgaagccctaacggcgatc
gacatcaactccagccgttcgaccaaaggtggcgacattgaagaaaccgctttccacacc
aacatggaagcggcttgcgaaattgcccgtcaattacgcctgcgtgacttaggtggttta
gtggtcatcgactttatcgatatgcactccaacaaacaccaacgagatgttgaaaacaaa
atgcgtgatgccgtaaagtcggaccgcgctcgcgtgcaaatcggcaaaatctctcgtttt
ggattgctagaaatgtcgcgtcaaagactgcgtccttcgattgaagaatcgactcaagtg
gtgtgccctcgctgtaaaggcgttggcgtgattcgcggcgtggaatctttaggattgtct
attcttcgtttattagaagaagagtctatgaaagagaacacccgccgcgtgactgtacag
ttaccagttgatgtggcgactttcttactcaatgaaaagcgtagccaaattacgcacatt
gaagatagacacaaaatgcacattttaatcgtaccgaatgagcatctttcaacgccacaa
tatttgattgaacgcacacgcatcaatgacgatattcctgaaggcgcaagctatgccatg
aaagaagtcattgccaaagaagaatatgcgttctctgaacctaaatctcaacaaaaacaa
gaagagcctgcattgaaaggcatagagcaaatgagcgccccagccccagtggctgttgcg
caagttgcaacgcctaaaaaacctggtttgctaactcgcctctggaatgctttattcagc
gccgctgaagaaaaagaagcccaggttgaagaacagcaaaaagaagtgcgtcgcaactct
cgcaataacaacaatcgtaatcgtaacgaccgtaatgatcgcaatcgtcgtcgcaataac
aaccgcaattctcaagaaggtgacgccaacacggatactgaagagaaggttgaacgcacc
gaccgtaaccgcaatcgtaacgagcgccctgaacgcaatgacgcgcctcgcaacgatgct
gcagaaggcaatagcaatcctcgtcgtagtcgtcgtaatcgtaagcctcaaacacctgaa
gccttagaagctctggaacaagacttggaaaacaacaactcacctttagtgacagatgac
tcgtctgaaaaacgccctgctaatgaacgcaatacgcgttacaacaaggcaaatgaagag
aaagttgaagttgaagattcaacagatgacaatcaagaagacaccgatggtgaagagggt
gacaaacgccgtccaagacgccgcagccgttataacacccgcagttacaatggtcgtcgt
cgcgcacctgctggcgctgcagacttgtcaattcactcaactatggaagaaacaactgaa
acagttcccactgaaagtgttgaatctacaaatgcagagtcgatgacaccgcctaccgat
gtgattgctgaaaagccagaaacggtgactcaggttgaaacagccgaaaccactgaaaca
gtcgaagcgcctaaagaagctgaaactgtgactgaaacggttgttgaagcgcctgttcaa
gcaacagaaccgcaggttgttgaagttgctgttgcagagcccgttgctaaaatgcttgtt
gaatcaacctcagaagtttctgcacctgctgaaaccgaggctgttgttgcaactgaagtc
accacgccagaggcaccaatatcagaagcgacgcaaaccgttgcagaaacgtctgataca
gaagaaaagccaaaagtttaa
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