Variovorax boronicumulans: CKY39_12125
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Entry
CKY39_12125 CDS
T05068
Name
(GenBank) HU family DNA-binding protein
KO
K03530
DNA-binding protein HU-beta
Organism
vbo
Variovorax boronicumulans
Brite
KEGG Orthology (KO) [BR:
vbo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vbo03032
]
CKY39_12125
03036 Chromosome and associated proteins [BR:
vbo03036
]
CKY39_12125
03400 DNA repair and recombination proteins [BR:
vbo03400
]
CKY39_12125
DNA replication proteins [BR:
vbo03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
CKY39_12125
Chromosome and associated proteins [BR:
vbo03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
CKY39_12125
DNA repair and recombination proteins [BR:
vbo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
CKY39_12125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HYPK_UBA
HU-CCDC81_euk_1
HU-CCDC81_euk_2
DUF2530
Motif
Other DBs
NCBI-ProteinID:
ATA53881
UniProt:
A0A1E7U491
LinkDB
All DBs
Position
2675523..2675795
Genome browser
AA seq
90 aa
AA seq
DB search
MNKTELIEHIAKNADISKAAATRALESTIGAIRTTLKKGGSVSLVGFGTFAVGKRAARTG
RNPRTGDAIKIKAAKIPKFRPGKALKDALN
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
gtgaacaagaccgaactgattgagcacatcgcaaagaacgccgatatttccaaagccgca
gcgacccgtgcgctcgaatccaccattggcgccattcgtaccacgctcaagaagggcggt
tccgtgtcgctcgtcggtttcggcactttcgcagtcggcaaacgcgcagcccgcaccggc
cggaatccccgcaccggcgacgcgattaaaatcaaggcagccaagatcccgaagttccgt
cccggcaaggcgctcaaagacgcgctgaactga
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