Wohlfahrtiimonas chitiniclastica: PE074_01390
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Entry
PE074_01390 CDS
T09056
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
wcn
Wohlfahrtiimonas chitiniclastica
Pathway
wcn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
wcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PE074_01390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wcn03019
]
PE074_01390
03009 Ribosome biogenesis [BR:
wcn03009
]
PE074_01390
Enzymes [BR:
wcn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PE074_01390
Messenger RNA biogenesis [BR:
wcn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PE074_01390
Ribosome biogenesis [BR:
wcn03009
]
Prokaryotic type
rRNA processing factors
PE074_01390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Phage_TAC_14
Motif
Other DBs
NCBI-ProteinID:
WHR55641
LinkDB
All DBs
Position
278356..281211
Genome browser
AA seq
951 aa
AA seq
DB search
MKRMLINASQPEETRVALVDGQRLYDLDIENATNIQKKANIYKGVITRIEPSLEACFVDY
GAERHGFLSFKEVSKEYYTEEAKSLSKPSIKEALKEGMEVIIQVEKEERGNKGAALTTFI
TLAGRYLVLMPNNPKAGGVSRRIEGQERVAIREAMSHLTIPEEMGVIVRTAGLGRTAEEL
QWDLDYLLTLWGSIKTASEEKAPFLIYQESNIIIRALRDYYRNDIGEILIDNKEIFEEAA
LFVSRTMPQIRPKIKLYEDQIPLFTRYQIENQIQSAYQREVKLPSGGALVIDYTEALISI
DINSGRATRGADIEETALNTNLEAAEEIARQLKLRDLGGLVVIDFIDMLESDHQRQVERT
FHEALSLDRARIQTGHISRFGLLEMSRQRLRPSLDETTHIVCPRCSGHGTIRNIKSLALE
VLRLIEEEALKERTSEIIVQLPVDVSIFLLNEKREDVSSIENRLNVRIVMIPNQNLETPH
FEISRHRSDQALLNNKVSNEHSIIEQPSNEALVNQAYNPAKPQKNIPVVSNMVPATPPPV
VEKPVEAQPTLWQMIVDWLKSLLSHPEEAKKETVKRSEQPKQRQRTNPRRKSNRRVTTRA
NAPEHNEIATVTRITEDRPDFSGKNGDKPADKAETKEKRNTNETRENREPRENRDNGEAP
KSRNRRSRNRNNQNTGDAKTDVKNDAPDASEKPAKQERAPRAERTDRNNKQDKGNDAVKQ
ERTPRPEFVEVEVNGETRKRRVRKGRPRVEEAAPEAVTPVDAAPAPKAETTPKAAKPEVI
VVADAVAETVIEAVPAKVEAAVEAVIEAEPVATVVEAIQTVSDHVTEVVDQVEAKVDAAV
ETATEAVEEIIIEHTPSVEATNVTATAEVEPEIVIQHTIVDTPEEKSAPEEKEVADLIEP
TIVVEDEVVTAPAAPKATLSVEEDLTVVIPKSEPEESRFKIIVEDDAPEKK
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttaattaatgcgagccaacccgaagagacgcgcgtcgcgttagtggat
ggccaacgcttatacgatttagacattgaaaacgcaacgaacattcagaaaaaagccaac
atttataaaggcgtcatcacccgcattgaaccttcattagaagcgtgttttgtggactat
ggtgcagagcgtcacggctttttatctttcaaagaagtgtccaaagaatactatacagaa
gaggcaaaaagtctctctaaaccttccatcaaagaagccttaaaagaaggcatggaagtg
atcatccaagtggaaaaagaagagcgtggcaataaaggcgcagctttaaccacattcatt
acattagctggtcgctacttagtcttaatgccaaataaccctaaagcgggcggtgtttcg
cgtcgcattgaaggacaagagcgcgtggccattcgtgaagcgatgagccacttaaccatt
cctgaagagatgggcgtcattgtgcgcaccgctggccttggccgcacagccgaagagtta
caatgggacttagattacctcttaaccttatggggttcgattaaaactgcctctgaagag
aaagccccgtttttgatctatcaagagagcaacatcatcatccgtgccctacgcgattac
tatcgcaatgacatcggtgaaatcttgatcgacaacaaagagatttttgaagaagcggca
ctgtttgtgagcagaaccatgccacaaattcgcccaaaaattaaactctatgaagatcaa
attccattgttcacccgttatcagattgaaaaccaaattcaatctgcctaccaacgtgaa
gtgaaattgccatccggcggtgctttggtcatcgactatacagaagccttgatctccatt
gacatcaactcaggccgtgcaacccgcggagctgacattgaagagacggcattaaacacc
aacttagaagccgcagaagagattgctcgtcaattgaaattgcgtgacttaggtggttta
gtggtcatcgactttatcgacatgcttgagtcagatcatcaacgccaagtggaacgcaca
ttccatgaagccttatccttagaccgcgcacgcattcaaaccgggcacatttcacgcttt
ggtttattagaaatgtctcgtcagcgtcttcgtccatcgttagatgaaaccacacacatt
gtgtgcccacgctgttcgggtcacggtacaattcgtaacatcaaatcattggccttagaa
gtgcttcgcctcattgaagaagaagctttaaaagagcgcaccagcgaaatcatcgtgcaa
ttgcccgtggatgtgtccatcttcttgttgaatgaaaaacgcgaagatgtgtcaagcatc
gaaaatcgcctcaatgtacgcattgtgatgattccaaatcaaaacttagaaacgcctcat
tttgaaatctcacgccatcgttcagatcaagcattgttgaacaacaaagtgagcaatgag
cacagcatcattgagcaaccatcgaacgaagcgcttgtcaatcaagcatacaaccctgca
aagccacaaaagaacatccctgtggtgagcaacatggtgccagcaacgccgccacctgtg
gttgaaaagccggttgaagcgcaacccaccctttggcagatgattgtggattggttaaaa
tccttactcagtcatcctgaagaagcgaaaaaagagacggttaaacgcagtgagcaacct
aaacagcgccaacgcaccaatccgcgccgcaagagcaatcgccgtgtgacaacgcgtgca
aatgcccctgagcacaatgagattgccacagtgacgcgcattacggaagatcgcccagat
ttttctggaaaaaatggtgacaagcctgccgataaagctgagacaaaagagaaacgcaac
accaatgaaacgcgtgagaatcgcgaaccacgtgaaaaccgtgacaatggtgaagcgcct
aaatctcgcaatcgccgctcacgcaatcgcaacaaccaaaacacaggtgatgcaaaaact
gacgtaaaaaatgatgcacctgatgcttcagaaaagcctgcaaaacaagagcgtgcccca
cgtgctgaacgcacagacagaaacaacaagcaagacaaaggcaatgatgcggtgaaacaa
gaacgcacgccacgtcctgaatttgtagaagttgaagtcaatggtgaaacccgtaagcgc
cgcgtgcgtaagggtcgtcctcgtgttgaagaggctgcacctgaagcagtgacaccagta
gatgcagcgccagcaccaaaagcagaaacaaccccaaaagctgcaaagcctgaagtgatt
gttgtcgccgatgctgtggctgaaactgtgattgaagctgtacccgctaaagttgaagct
gcggttgaagcggtgatcgaagcagaacctgtcgcaaccgtggttgaagccattcaaacg
gtctctgaccacgtgacggaagtggttgatcaagtggaagcaaaagtggacgctgcggta
gaaactgccacagaagctgtggaagaaatcatcattgagcacacgccaagcgttgaagcc
accaatgtcacagcaacggctgaagttgagccagaaattgtgattcaacacaccattgtg
gacacaccagaagaaaaaagtgcgcctgaagaaaaagaagtcgcagacctgattgaaccc
acaatcgtggtggaagatgaagtggtcacagcacctgctgcacctaaagccaccctcagc
gttgaagaagatttaaccgtggtgattccaaaaagcgaacctgaagagagccgctttaag
atcatcgtggaagatgatgcccctgagaaaaaatag
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