Xanthomonas citri pv. citri UI7: J159_02259
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Entry
J159_02259 CDS
T03733
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xcu
Xanthomonas citri pv. citri UI7
Pathway
xcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J159_02259
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xcu03019
]
J159_02259
03009 Ribosome biogenesis [BR:
xcu03009
]
J159_02259
Enzymes [BR:
xcu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
J159_02259
Messenger RNA biogenesis [BR:
xcu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
J159_02259
Ribosome biogenesis [BR:
xcu03009
]
Prokaryotic type
rRNA processing factors
J159_02259
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AJY82223
LinkDB
All DBs
Position
complement(2453893..2457558)
Genome browser
AA seq
1221 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFMDY
GAERHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFIS
LAGRYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLDIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLQTWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQ
EFMKQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAV
DVNSSRATKGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVENR
LQNALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLS
IIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPH
YEVTRLRENELGEESGKPSYQRGTPRKLPVHALTKAQLNIPAAPAVTSIKPSQPAPVREE
APAPVAPVAAPVPVVTVPIPAPVTGVVGWLKRIFGGVEPVAPAPESTPRPRQNDAGRNNR
SERGERGGQRRDGRDARNGGNSGNQQRGNGGNGNGANKERRDERRQPANAQGAQNGAQAQ
QQVQVPKPPRNEAQAPKPQQQKPKPQNQSPRPPRAPAQQDGAPAERQPRPARQDEGTAAA
QTPTPTAATATTSSVVSAIADAAAAPPTNAQTNAHEAAQAHPVDVTVSESTADRGADANA
AAPAQEAAGDDAANGEGGSRRRRGRRGGRRRRRGAGANGEGGASVDGLEGDDLDSDADND
LDGDSEGDDAGMHAHASAAPRAGQPEFDFDDDAPAPAVRAKPEPAVQATAKPRPVPKERA
EPQVGSDTASTTAPVSNTVPASQPSATPVANADAARERPAAPVAATDATAKPAPAATAST
VAGTEGAAAQAAEQRPATIAQQASATPAPIAAPAPGVSAPAAAVAPAAGTAPVAAAVAPA
PAVASPVTSNAATSSPQQPSAPASAAPPAAAQAAKPDQQQPAASADVETPSVQATPVQPA
RATPAEDLSAPAAASPASQAAVVTVTSPHAEQSASQAPSSEVATTSTSTVVQASPSADTA
PVRRPYAPVQTTMLDALSPNEAAPAASSASKPPAAPAAAQESQADKPKPTVVVSEAVKPV
APSAEADRPRDDDSNKPRGDH
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgctgatcaacgcaacgcaggccgaagagctgcgcgtggcgattgtggac
ggccagaccctgtacgacatcgacatcgaacagccgtccaaggaacaaaagaagtccaac
atctataagggccgtattacccggcttgagccttccctggaagcggcgttcatggactac
ggcgccgagcgtcatggcttcctgccgttgaaggaaatttcccgcgattatttccaggcc
ggcgtcgaccataacaagtcgaccattcgcgagcttctgcgcgaaggccaggaaatcgtg
gtgcaggtcgacaaggaagagcgtggcaacaagggcgccgccctgaccacgttcatctcg
ctggccggccgctacatggtgctgatgcccaattcgccgagcgccggtggcgtttcgcgc
cgcatcgagggtgaagaccgcgccgcgttgaaggaagcgctggacaagctcgacattcct
gacgacatgggcgtgatcatccgcaccgccggcgtgggccgcgatgccgaagaactgcag
tgggatctggactatctgctgcagacctggaaggcgattgccgaagctgcgctgagcaag
ccggccgcgttcctgatctaccaggaatcgcgcctgatcatccgcgccctgcgcgactac
ctgcgggccgatgtcggcgagatcctggtcgatacgccggagctgtacgccgacgcccag
gagttcatgaagcaggtgatgccgcagagcctgcgcaagctcaagcactacaccgacgat
atcccgctgttcaaccgcttccagatcgaatcgcagatcgaaggcgcctatgagcgcaac
gtgcgcctgccctcgggcggctcgatcgtggtggaccagaccgaagcgctgaccgccgtc
gacgtcaactcctcgcgcgccaccaagggcagcgatatcgaagaaaccgcgttccagacc
aatctggaagcggcagaagaagtcgcacgccagctgcgcctgcgcgacctgggcggcctg
gtggtcatcgacttcatcgacatggcctcgtccaagcaccagcgcgaagtcgaaaacagg
ttgcagaacgcgctcaagtacgaccgtgcgcgcgtgcagttgggccgtatctcgcgtttc
ggcctgatggaaatgagccgtcaacggctacgtccgagcctgggcgaatccagccagatc
gtctgcccgcgttgcgacggccatggccgcatgcgcagcgtcgagtcgctgtcgctgtcg
atcatccgcgtggccgaagaacacgccatgaaggaaaacaccgggcaggtgctggtccag
gcgccggtggaaatcgccaattacctgctcaacgaaaagcgtagtgcgctgcgtgaaatc
gagcagcgccatgagtcgccgatcatcatcgtcgccgacgagcaactgcacaccccgcac
tacgaagtcacgcgcctgcgcgagaacgagctgggcgaagagagcggcaagccgagctac
cagcgaggcaccccgcgcaagcttccggtgcatgcactgaccaaggcgcagttgaacatt
cctgccgctccggcggtcacgtcgatcaagccgagccaaccggcaccggtgcgcgaagaa
gcccctgccccggtcgcgcccgtcgctgctccggtgccggtggtgaccgtgcccattccg
gcaccggtcactggcgtggtgggctggctgaagcggatcttcggcggcgtcgaaccggtt
gccccggccccggagtcgaccccgcgtccgcgccagaacgatgccggccgcaataaccgt
agcgagcgcggcgagcgtggcggtcagcgccgcgatggccgcgatgcccgcaacggcggc
aacagtggcaaccagcaacgtggcaatggcggcaacggcaacggcgccaacaaggaacgc
cgtgacgagcgtcgtcagcctgccaacgcccagggcgcgcagaatggcgcacaggcacag
cagcaggtgcaggtgcccaagccgccgcgcaacgaagcgcaggcgccaaagccgcagcag
cagaagcccaagccgcagaaccagagcccgcgtccgccacgtgcgcctgcacagcaggat
ggcgcgccggccgagcgtcagccgcgtccggcacgccaggatgaaggcacggcagcggcg
cagaccccgacccccactgccgcaacggcaaccacgtcgagcgtggtgtccgccattgcc
gatgccgctgccgctccacccaccaatgcgcagaccaacgctcatgaagcggcgcaggcg
catccggtcgatgtcacagtgagcgaatccaccgctgatcgcggtgccgacgcgaatgcg
gctgcaccggctcaggaggccgcaggcgacgatgcagccaatggggaaggcggaagccgc
cgtcgccgcggtcgtcgtggtggccgccgtcgtcgtcgtggcgctggcgccaacggagaa
ggtggtgccagcgtcgatggtctggagggcgacgatctggacagcgatgccgacaacgat
ctcgatggcgacagcgaaggtgacgacgctggtatgcatgcgcatgcctcggccgcaccg
cgcgctggccagccggaattcgacttcgacgacgacgcaccggcacccgcggtgcgcgcc
aagccagaacccgcggtccaggcaaccgccaagccgcgtccggttcccaaggagcgtgca
gagccacaggtcggcagtgatacggcctcgaccactgcgccggtttcaaataccgtgccg
gcatcgcagccgtcagcaacacccgttgccaacgctgacgccgcccgcgagcgccctgct
gcgcccgtcgcggctacggacgcaactgccaaacccgcgccagctgccacagcgtcgacg
gttgccggcaccgagggtgcggcagcgcaggctgcggaacagcgccccgcaacgatcgct
cagcaggcatccgctaccccggcaccgattgccgctcccgcaccaggggtatccgctccg
gcagctgcagtggctcccgccgccgggacggcaccggtcgcggctgccgtggctccggca
ccggctgtcgcatcgcctgtgaccagcaatgcggcgacaagcagcccgcagcagccttcg
gcgccggccagtgcggctccgcctgccgctgcccaggccgcgaagcccgaccaacagcaa
cccgctgcgtcggcggacgtcgaaacgccttcggtgcaagccactccggtgcagccggca
cgtgcaacgcctgctgaggacctatcggcacctgcggcagcttccccggcgtcgcaggcc
gcggtggtcacggtcacttcgccgcacgccgagcagtctgcttcacaggcgccatcttcc
gaggtggcaacgacctctacctcgacggttgtgcaggcaagcccgagtgcagacaccgcg
cccgtgcgcaggccatatgctccggtgcagaccaccatgctcgatgcgctgagcccgaac
gaggctgcgccagcggcctcctcggccagcaagcctccggcagcccctgcagcagcgcag
gaatcgcaggcagacaagcccaagccgacggtggttgtgtccgaagcagtcaagccagtt
gctccatcggccgaagccgaccggccgcgggatgacgacagcaacaagccgcgtggcgat
cactga
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