Xanthomonas euroxanthea: XSP_002220
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Entry
XSP_002220 CDS
T07902
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xeu
Xanthomonas euroxanthea
Pathway
xeu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xeu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XSP_002220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xeu03019
]
XSP_002220
03009 Ribosome biogenesis [BR:
xeu03009
]
XSP_002220
Enzymes [BR:
xeu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
XSP_002220
Messenger RNA biogenesis [BR:
xeu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
XSP_002220
Ribosome biogenesis [BR:
xeu03009
]
Prokaryotic type
rRNA processing factors
XSP_002220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
CAD1792230
UniProt:
A0A8E4GEM4
LinkDB
All DBs
Position
1:2654928..2658689
Genome browser
AA seq
1253 aa
AA seq
DB search
MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE
RHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFISLAG
RYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDL
DYLLQTWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADIGEILVDTPELYADAQEFM
QQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVN
SSRATKGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASTKHQREVENKLQN
ALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIR
VAEEHAMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPHYEV
TRLRENELGEDSGKPSYQRGTPRKLPVHALTKAQLNIPAAPAVTSIKPSQPAPLREEAPA
PVAAAPAPAPVPVAALPLPAPVTGVVGWLKRIFGGVEPVAPAPESTQRPRQNDAGRSSRN
ERSDRGGQRRDGRDARNGGNGGSQHRGNGNGNGANKERRDERRQPANGQAAQNGGQAQQV
QVPKPPRGEAQQPKQPQQAQQQKQKPQNQAPRPPRAAVQQQDGAPSERQQRPARQDEGTA
SAQTLTSTAATATTATVVAAIAETAAPATQASAHEAAPAHPVEVIVTEAHADRGTDANAD
GQAPEAAGDDAANGEGGSRRRRGRRGGRRRRRGAGANGEGGSGVDGLETDDLDGDAEGDL
DGDTESDDAGAQVHTSAAPRAGQPEFDFDDDATTPAVAARTKPESSTPAAVKPRPVPKER
AEAPLAADTTSTTAPVSNATPSFEQQAASPAVTAAEQARGDAPAASVAPVATAPAGNAAP
AAAQPAVQASANAPRPQAPQAPVVAQESANPQAQAPVAAATPSAASSPVAASAPVATSAA
APAAASPVESAASSPVESAASSAEPSSEPSMRSTPASVSADAAAPAVARQEVARQEQAAP
VAAAAATQAEPAKTDATPAAGSVPKPVAATPSSAQANVVTSKPPHAEPSTVESPATDVAA
TSTTTVPQTSPSVDAAPARKPYAPVQTTLLDALAPADATAATPPQAETPVPYKAPERPAS
VAPVVPADATEPTADKPKATVVVSEAAKPADASPNGDDAQAQQDDTNKPRGDH
NT seq
3762 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcaacgcaacgcaggccgaagagctgcgcgtggcgattgtggacggccagacc
ctgtacgacatcgacatcgaacagccgtccaaggaacagaagaagtccaacatctacaag
ggccgtatcacccggctcgagccctccctggaggcggcgttcgtggactatggcgccgag
cgccatggcttcctgccgctgaaggaaatctcccgcgattatttccaggctggcgtcgac
cacaacaagtcgaccatccgcgagttgctgcgcgaaggccaggaaatcgtggtgcaggtc
gacaaggaagagcgtggcaacaagggcgccgccctgaccacgttcatctcgctggccggc
cgctacatggtgctgatgcccaattcgccgagcgccggtggcgtctcgcgccggatcgaa
ggcgaagaccgtgccgcgctgaaggaagcgctggacaagctcgacatccccgacgacatg
ggcgtgatcatccgcaccgccggtgtcggccgtgacgccgaagagctgcagtgggacctg
gactacctgctgcagacctggaaggcgatcgccgaggcggcgctgagcaagccggccgcg
ttcctgatctaccaggaatcgcgcctgatcatccgcgccctgcgcgactacctgcgcgcc
gacatcggcgagatcctggtcgatacgccggagctgtacgccgacgcccaggagttcatg
cagcaggtgatgccgcagagcctgcgcaagctcaagcactacaccgacgacattccgctg
ttcaaccgcttccagatcgaatcgcagatcgaaggcgcctacgagcgcaacgtgcggctg
ccctcgggtgggtcgatcgtggtcgatcagaccgaagcgctgaccgccgtcgacgtgaac
tcctcgcgcgccaccaagggcagcgacatcgaggagaccgccttccagaccaatctggaa
gcggccgaggaagtcgcgcgccagctgcgcctgcgcgacctgggcggcctggtggtgatc
gacttcatcgacatggcctcgaccaagcaccagcgcgaagtcgaaaacaagctgcagaac
gcgctcaagtacgaccgcgcacgcgtgcagctgggccgcatctcgcgctttggcctgatg
gaaatgagccgccagcgcctgcgtccgagcctgggcgaatccagccagatcgtgtgcccg
cgttgcgacggccatggccgcatgcgcagcgtcgagtcgctgtcgctgtcgatcatccgc
gtggccgaagagcacgccatgaaggaaaacaccggacaggtgctggtgcaggccccggtg
gagatcgccaactacctgctcaacgaaaagcgcagcgcgctgcgtgagatcgagcagcgt
cacgaatcgccgatcatcatcgtcgccgacgaacagctgcataccccgcactacgaagtc
acccgcctgcgcgagaacgagctgggcgaagacagcggcaagccgagctaccagcgcggc
accccgcgcaagttgccggtacatgcgctgaccaaggcacagttgaatatcccggctgcg
ccggcagtgacctcgatcaagccgagccagccggcgccgctgcgtgaagaggcccctgcc
ccggttgccgccgcacctgcaccggctccggttccggtcgcggcactgccgctgcccgcg
ccggtgaccggtgtggtcggctggctgaagcgcatcttcggtggcgtcgagccagtcgcg
cctgcgcccgagtcgacccagcgtccgcgtcagaacgatgccggccgcagcagccgtaac
gagcgtagcgaccgtggcggtcagcgtcgcgacggccgtgatgcccgcaatggtggcaac
ggtggcagtcagcaccgcggcaatggcaacggcaatggcgccaacaaggagcgtcgtgac
gagcgtcgtcagccggccaatggccaggctgcgcagaacggcgggcaggcgcagcaggtg
caggtgcccaagccgccacgcggcgaggcacagcaacccaagcagccgcagcaggcacag
cagcagaagcagaagccgcagaaccaggcaccgcgcccgccgcgtgcagctgtacagcag
caggacggcgcgccgtccgagcggcagcagcggcctgcgcgtcaggacgaaggcactgcc
tcggcgcagacgctgacctccacggccgcaaccgccacgactgcgaccgtggtcgcggcg
attgccgaaaccgcggcaccggcaacgcaggcctcggcacatgaggctgcaccggcacac
ccggtcgaggtcatcgtgaccgaagcgcatgccgatcgcggcaccgacgcgaatgcggac
ggccaggcaccggaggcggcaggcgatgatgcggccaatggcgaaggcggcagccgtcgt
cgtcgcggtcgtcgcggtggccgtcgtcgccgtcgcggcgctggtgcaaacggtgaaggc
ggtagcggcgtcgatggtctggaaacggacgatctggacggcgatgccgagggcgatctc
gatggcgacaccgagagcgacgatgccggtgcgcaggtccacacctctgctgccccgcgc
gccggacagccggagttcgacttcgacgatgacgcgaccacgcccgcggtagcggcacgc
accaagccggagtccagcactccggcagcagtgaagccgcgcccggtaccgaaggaacgt
gcggaagcgccgctggcggccgacacgacgtcgaccacggcgccggtttccaatgccacg
ccgtcgttcgaacagcaagctgcgagccctgcagtgaccgcagccgaacaggcacgtggc
gatgcaccggcggcctctgtggcaccggttgcaacggccccggctggcaatgcagcgcca
gctgcagcgcaaccggctgtgcaggcgtcggccaatgcaccgcgtccgcaagcgcctcag
gctccggtcgttgcgcaggaatcggcgaatccgcaggctcaggctccggttgccgctgcg
actccgtccgctgcgtcgagcccggttgccgcttcggctccggttgcgacgtcggcggcg
gctcctgctgcagcttcgcctgtcgagagtgccgcttcctcgcctgtcgagagtgccgct
tcctcggcagagccttcgtccgagccgtcgatgcggtcaacaccggcgtcggtatcggcc
gacgctgcagcgccggccgttgctcggcaggaagttgcccggcaggaacaggcagcaccg
gtggccgccgcggcagcaacgcaagcggagccggcgaagaccgacgcaacgccggcagcg
ggcagcgttcccaagccggtcgctgctacgccgtcgagcgcccaggcgaacgtggtgaca
tccaagccgccgcatgccgagccgtcaacggtggaaagcccggcaaccgatgttgccgcg
acgtccaccaccacggtgccgcagacctccccgtctgtcgacgctgcgccggcacgcaag
ccgtacgctccggtgcagaccacgctgctggacgccttggctccggccgatgcaaccgcg
gcgacaccgccacaggccgaaacgccggtgccctacaaggcgcccgagcggccggcatcg
gtcgcgcccgtggtgcctgcagacgccaccgagccgactgcagacaagccgaaggcgacc
gtcgtcgtgtccgaggcggcgaagccggcagatgcatcgcctaacggcgatgacgcccag
gcgcagcaagacgacaccaacaagccgcgcggcgatcactga
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integrated database retrieval system