KEGG   Xanthomonas euroxanthea: XSP_002220
Entry
XSP_002220        CDS       T07902                                 
Name
(GenBank) Rne/Rng family ribonuclease
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
xeu  Xanthomonas euroxanthea
Pathway
xeu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:xeu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    XSP_002220
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xeu03019]
    XSP_002220
   03009 Ribosome biogenesis [BR:xeu03009]
    XSP_002220
Enzymes [BR:xeu01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     XSP_002220
Messenger RNA biogenesis [BR:xeu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     XSP_002220
Ribosome biogenesis [BR:xeu03009]
 Prokaryotic type
  rRNA processing factors
   XSP_002220
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1
Other DBs
NCBI-ProteinID: CAD1792230
UniProt: A0A8E4GEM4
LinkDB
Position
1:2654928..2658689
AA seq 1253 aa
MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE
RHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFISLAG
RYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDL
DYLLQTWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADIGEILVDTPELYADAQEFM
QQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVN
SSRATKGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASTKHQREVENKLQN
ALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIR
VAEEHAMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPHYEV
TRLRENELGEDSGKPSYQRGTPRKLPVHALTKAQLNIPAAPAVTSIKPSQPAPLREEAPA
PVAAAPAPAPVPVAALPLPAPVTGVVGWLKRIFGGVEPVAPAPESTQRPRQNDAGRSSRN
ERSDRGGQRRDGRDARNGGNGGSQHRGNGNGNGANKERRDERRQPANGQAAQNGGQAQQV
QVPKPPRGEAQQPKQPQQAQQQKQKPQNQAPRPPRAAVQQQDGAPSERQQRPARQDEGTA
SAQTLTSTAATATTATVVAAIAETAAPATQASAHEAAPAHPVEVIVTEAHADRGTDANAD
GQAPEAAGDDAANGEGGSRRRRGRRGGRRRRRGAGANGEGGSGVDGLETDDLDGDAEGDL
DGDTESDDAGAQVHTSAAPRAGQPEFDFDDDATTPAVAARTKPESSTPAAVKPRPVPKER
AEAPLAADTTSTTAPVSNATPSFEQQAASPAVTAAEQARGDAPAASVAPVATAPAGNAAP
AAAQPAVQASANAPRPQAPQAPVVAQESANPQAQAPVAAATPSAASSPVAASAPVATSAA
APAAASPVESAASSPVESAASSAEPSSEPSMRSTPASVSADAAAPAVARQEVARQEQAAP
VAAAAATQAEPAKTDATPAAGSVPKPVAATPSSAQANVVTSKPPHAEPSTVESPATDVAA
TSTTTVPQTSPSVDAAPARKPYAPVQTTLLDALAPADATAATPPQAETPVPYKAPERPAS
VAPVVPADATEPTADKPKATVVVSEAAKPADASPNGDDAQAQQDDTNKPRGDH
NT seq 3762 nt   +upstreamnt  +downstreamnt
atgctgatcaacgcaacgcaggccgaagagctgcgcgtggcgattgtggacggccagacc
ctgtacgacatcgacatcgaacagccgtccaaggaacagaagaagtccaacatctacaag
ggccgtatcacccggctcgagccctccctggaggcggcgttcgtggactatggcgccgag
cgccatggcttcctgccgctgaaggaaatctcccgcgattatttccaggctggcgtcgac
cacaacaagtcgaccatccgcgagttgctgcgcgaaggccaggaaatcgtggtgcaggtc
gacaaggaagagcgtggcaacaagggcgccgccctgaccacgttcatctcgctggccggc
cgctacatggtgctgatgcccaattcgccgagcgccggtggcgtctcgcgccggatcgaa
ggcgaagaccgtgccgcgctgaaggaagcgctggacaagctcgacatccccgacgacatg
ggcgtgatcatccgcaccgccggtgtcggccgtgacgccgaagagctgcagtgggacctg
gactacctgctgcagacctggaaggcgatcgccgaggcggcgctgagcaagccggccgcg
ttcctgatctaccaggaatcgcgcctgatcatccgcgccctgcgcgactacctgcgcgcc
gacatcggcgagatcctggtcgatacgccggagctgtacgccgacgcccaggagttcatg
cagcaggtgatgccgcagagcctgcgcaagctcaagcactacaccgacgacattccgctg
ttcaaccgcttccagatcgaatcgcagatcgaaggcgcctacgagcgcaacgtgcggctg
ccctcgggtgggtcgatcgtggtcgatcagaccgaagcgctgaccgccgtcgacgtgaac
tcctcgcgcgccaccaagggcagcgacatcgaggagaccgccttccagaccaatctggaa
gcggccgaggaagtcgcgcgccagctgcgcctgcgcgacctgggcggcctggtggtgatc
gacttcatcgacatggcctcgaccaagcaccagcgcgaagtcgaaaacaagctgcagaac
gcgctcaagtacgaccgcgcacgcgtgcagctgggccgcatctcgcgctttggcctgatg
gaaatgagccgccagcgcctgcgtccgagcctgggcgaatccagccagatcgtgtgcccg
cgttgcgacggccatggccgcatgcgcagcgtcgagtcgctgtcgctgtcgatcatccgc
gtggccgaagagcacgccatgaaggaaaacaccggacaggtgctggtgcaggccccggtg
gagatcgccaactacctgctcaacgaaaagcgcagcgcgctgcgtgagatcgagcagcgt
cacgaatcgccgatcatcatcgtcgccgacgaacagctgcataccccgcactacgaagtc
acccgcctgcgcgagaacgagctgggcgaagacagcggcaagccgagctaccagcgcggc
accccgcgcaagttgccggtacatgcgctgaccaaggcacagttgaatatcccggctgcg
ccggcagtgacctcgatcaagccgagccagccggcgccgctgcgtgaagaggcccctgcc
ccggttgccgccgcacctgcaccggctccggttccggtcgcggcactgccgctgcccgcg
ccggtgaccggtgtggtcggctggctgaagcgcatcttcggtggcgtcgagccagtcgcg
cctgcgcccgagtcgacccagcgtccgcgtcagaacgatgccggccgcagcagccgtaac
gagcgtagcgaccgtggcggtcagcgtcgcgacggccgtgatgcccgcaatggtggcaac
ggtggcagtcagcaccgcggcaatggcaacggcaatggcgccaacaaggagcgtcgtgac
gagcgtcgtcagccggccaatggccaggctgcgcagaacggcgggcaggcgcagcaggtg
caggtgcccaagccgccacgcggcgaggcacagcaacccaagcagccgcagcaggcacag
cagcagaagcagaagccgcagaaccaggcaccgcgcccgccgcgtgcagctgtacagcag
caggacggcgcgccgtccgagcggcagcagcggcctgcgcgtcaggacgaaggcactgcc
tcggcgcagacgctgacctccacggccgcaaccgccacgactgcgaccgtggtcgcggcg
attgccgaaaccgcggcaccggcaacgcaggcctcggcacatgaggctgcaccggcacac
ccggtcgaggtcatcgtgaccgaagcgcatgccgatcgcggcaccgacgcgaatgcggac
ggccaggcaccggaggcggcaggcgatgatgcggccaatggcgaaggcggcagccgtcgt
cgtcgcggtcgtcgcggtggccgtcgtcgccgtcgcggcgctggtgcaaacggtgaaggc
ggtagcggcgtcgatggtctggaaacggacgatctggacggcgatgccgagggcgatctc
gatggcgacaccgagagcgacgatgccggtgcgcaggtccacacctctgctgccccgcgc
gccggacagccggagttcgacttcgacgatgacgcgaccacgcccgcggtagcggcacgc
accaagccggagtccagcactccggcagcagtgaagccgcgcccggtaccgaaggaacgt
gcggaagcgccgctggcggccgacacgacgtcgaccacggcgccggtttccaatgccacg
ccgtcgttcgaacagcaagctgcgagccctgcagtgaccgcagccgaacaggcacgtggc
gatgcaccggcggcctctgtggcaccggttgcaacggccccggctggcaatgcagcgcca
gctgcagcgcaaccggctgtgcaggcgtcggccaatgcaccgcgtccgcaagcgcctcag
gctccggtcgttgcgcaggaatcggcgaatccgcaggctcaggctccggttgccgctgcg
actccgtccgctgcgtcgagcccggttgccgcttcggctccggttgcgacgtcggcggcg
gctcctgctgcagcttcgcctgtcgagagtgccgcttcctcgcctgtcgagagtgccgct
tcctcggcagagccttcgtccgagccgtcgatgcggtcaacaccggcgtcggtatcggcc
gacgctgcagcgccggccgttgctcggcaggaagttgcccggcaggaacaggcagcaccg
gtggccgccgcggcagcaacgcaagcggagccggcgaagaccgacgcaacgccggcagcg
ggcagcgttcccaagccggtcgctgctacgccgtcgagcgcccaggcgaacgtggtgaca
tccaagccgccgcatgccgagccgtcaacggtggaaagcccggcaaccgatgttgccgcg
acgtccaccaccacggtgccgcagacctccccgtctgtcgacgctgcgccggcacgcaag
ccgtacgctccggtgcagaccacgctgctggacgccttggctccggccgatgcaaccgcg
gcgacaccgccacaggccgaaacgccggtgccctacaaggcgcccgagcggccggcatcg
gtcgcgcccgtggtgcctgcagacgccaccgagccgactgcagacaagccgaaggcgacc
gtcgtcgtgtccgaggcggcgaagccggcagatgcatcgcctaacggcgatgacgcccag
gcgcagcaagacgacaccaacaagccgcgcggcgatcactga

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