Xanthomonas hortorum pv. gardneri: BI317_12145
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Entry
BI317_12145 CDS
T04668
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xga
Xanthomonas hortorum pv. gardneri
Pathway
xga03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xga00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BI317_12145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xga03019
]
BI317_12145
03009 Ribosome biogenesis [BR:
xga03009
]
BI317_12145
Enzymes [BR:
xga01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BI317_12145
Messenger RNA biogenesis [BR:
xga03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BI317_12145
Ribosome biogenesis [BR:
xga03009
]
Prokaryotic type
rRNA processing factors
BI317_12145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
APP84803
LinkDB
All DBs
Position
complement(2612383..2616111)
Genome browser
AA seq
1242 aa
AA seq
DB search
MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE
RHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFISLAG
RYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDL
DYLLQTWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADIGEILVDTPELYADAQEFM
QQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVN
SSRATKGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASTKHQREVENKLQN
ALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIR
VAEEHAMKENTGQVLVQAPVEIANYLLNEKRSALREIENRHASPIIIVADEQLHTPHYEV
TRLRENELGEDSGKPSYQRGTPRKLPVHALTKAQLNIPAAPAVTSIKPSQPAPAREEAPA
PVAAAPAPAPVVALPLPAPVTGVVGWLKRIFGGVEPVAPVPESTQRPRQSDPARGNRNER
GDRGGQRRDGRGEARNGGNQQRGNGGNGGNGNGNGANKERRDERRQPANGQSAQNPQNGG
QAQQQVQVAKPPRNEPQAPKQPQQGQQQKQKPQNQAPRPPRASAQQDGAPSERQQRPARQ
DEGTASAQTLTATAATATTAGVVSAIAETAAPATTHVPANEANPAHPVDVIVTEAHADRG
TDASADGQAPDAAGDDSANGEGGSRRRRGRRGGRRRRRGAGANGEGGIGADGLETDDLDG
DAEGDLDGDNENEGDEAGTQTHASAAPRAGQPEFDFDDEAAPAAAVRARPESSTPAAVKP
RPVPKERSESQVAADTTSTTAPVSNATPSFERQAAAAPVAAAAEQARGDASVASAAPVAQ
SAPAATPAPVAAPTPVQTSVATPAPVVAPASVAASTPAATSTPVATPAAVVTPAPAAAPV
ERAATTTSATAPESVTQQRQVSSASTDVAAPAAVSPERTAPVAAPAPVQAESVKAETTPA
AAPVHTQAAPAPSSVPAAQAEVVTVKPSQAAPSSAASAAVDVAVTSTTTVPQSTPAADAA
PVTQARKLYAPVQTTLLDALAPADATVPASSASAPAETPAPYNAPEQPAAVAPVAPANVQ
KQADDAHKPTVVVPEAVKPVAPSTATEAQEQEDDTNKPRSDH
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcaacgcaacgcaggccgaagagctgcgcgtagcgattgtggacggccagacc
ctgtacgacatcgacatcgaacagccgtccaaggaacaaaagaagtccaacatctacaag
ggccgtatcacccggctcgagccctcgctggaagcggcgttcgtggactatggcgccgag
cgccatggcttcctgccgctgaaggaaatctcccgcgattacttccaggctggcgtcgac
cacaacaagtcgaccattcgcgagctgttgcgcgaaggccaggaaatcgtggtgcaggtc
gacaaggaagagcgtggcaacaagggcgccgccctgaccacgtttatttcgctggccggc
cgctacatggtgctgatgcccaattcgccgagcgccggtggcgtctcgcgccggatcgaa
ggcgaagaccgtgccgcgctgaaggaagcgctggacaagctcgatatccccgacgacatg
ggcgtgatcatccgcaccgccggtgtcggacgtgacgccgaagagctgcagtgggatctg
gattacctgctgcagacctggaaggcgattgccgaggctgcgctgagcaagccggcggcg
ttcctgatctaccaggaatcgcgcctgatcattcgcgccctgcgcgactacctgcgcgcc
gacatcggcgaaatcctggtcgatacgccggagctgtacgccgacgcccaggaattcatg
cagcaggtgatgccgcaaagcctgcgcaagctcaagcactacaccgacgacattccgctg
ttcaaccgcttccagatcgaatcgcagatcgaaggcgcctatgagcgcaatgtgcggttg
ccctcgggcggctcgatcgtggtcgaccagaccgaagcgctgactgccgtcgacgtgaac
tcctcgcgcgccaccaagggcagtgatatcgaagagaccgcgttccagaccaatctggaa
gcggccgaagaagtggcccgtcagttacgcctgcgcgacctgggcggcctggtggtgatc
gacttcatcgacatggcctcgaccaagcatcagcgcgaagtcgaaaacaagttgcagaac
gcgctcaagtacgaccgtgcgcgcgtgcagctgggccgtatctcgcgcttcggcctgatg
gaaatgagccgccagcgcctgcgtccgagcctgggcgaatccagccagatcgtgtgcccg
cgttgcgacggccatggccgcatgcgcagcgtcgagtcgttgtcgctgtcgatcatccgc
gtagccgaagagcacgcaatgaaggagaacacaggacaggtgctggtgcaggccccggtg
gagatcgccaattacctgctcaacgaaaagcgcagcgcgctgcgcgagatcgaaaatcgt
catgcctcgccgatcatcatcgtcgccgacgagcagctgcacactccgcattacgaagtc
acgcgtctgcgtgagaacgagctgggcgaagacagcggcaagccgagctatcagcgtggt
acgccgcgcaagttgccggtgcatgcgctgaccaaggcgcagttgaacattccggcagcg
cctgcagtgacctcgatcaagccgagccagccggctccggcgcgtgaggaggcccctgcc
ccggtcgctgcagcacctgccccggctccggtcgtcgctctgccacttcctgcgccggtc
accggcgtggtcggttggctgaagcggatcttcggtggtgtcgagccagtggctccggtc
cccgagtcgacccagcgtccgcgccagagcgacccagcccgtggcaaccgcaacgagcgt
ggcgatcgtggtggtcagcgccgagatggccgtggtgaagcgcgtaacggcggcaatcag
cagcgtggcaatggtggtaacggcggcaatggcaacggcaatggcgccaacaaggagcgt
cgcgatgagcgtcgccagcctgccaatggccagagcgcgcagaacccgcagaatggcggt
caggcgcagcagcaggtgcaggtcgccaagccgccgcgcaacgaaccgcaggcacccaag
caaccgcagcagggccagcagcaaaagcagaagccgcagaatcaggctccgcgtcccccg
cgtgcatctgcacagcaggacggcgcgccgtccgagaggcagcagcgccccgcccgtcag
gacgaaggcacggcttcggcacagacgctgaccgcaactgccgcaaccgcgacgactgcc
ggtgtggtttcggcaatcgccgaaaccgccgcgccggcgacgacgcacgttcccgccaat
gaagccaacccggcacacccggtcgacgtcatcgtgaccgaagcgcatgccgaccgtggc
actgacgccagtgcagacgggcaggcaccggatgcagcaggcgatgattcggccaatggc
gaaggcggcagccgtcgtcgtcgcggccgtcgtggcggccgtcgtcgtcgtcgtggtgct
ggcgcaaatggtgaaggtggtatcggcgccgatggtctggaaacggacgatctggatggc
gatgccgaaggcgatctcgatggcgacaacgagaacgaaggcgacgaagccggcacgcag
acgcatgcctccgctgcaccgcgcgccggccagccggagttcgacttcgacgatgaagcc
gcgcctgcagcagctgtgcgcgccaggccggagtccagcactccagcagcagtgaagcca
cgtccggtgccgaaggagcgttcggaaagccaggtagcggccgacactacgtcgactact
gcaccggtctccaatgccacgccgtccttcgaacggcaggctgcggcggctccggttgca
gctgcagccgagcaggcgcgtggcgatgcttcagttgcctctgcggcacctgttgcgcaa
tcggcaccggcggcgacacctgctccggttgcagctccgacgcccgtgcagacttcggtt
gctactccggctccagttgtggctccggcttcggtcgccgcctcgacgccggctgccacc
tcgacccccgttgcaactcctgccgcggtcgtgacgcctgctcctgcagctgcgcctgtc
gagcgtgccgctacgacgacgtcggcgactgcgccggagtcggttacgcagcagaggcag
gtgtcgtcggcatcgactgacgttgcagcacccgctgcggtcagcccggaacgcactgca
cccgtcgcggccccggcaccagtgcaagcggagtcggtgaaagccgagacaactccggct
gctgctccagtgcacacgcaagcagcacctgcgccttcgagcgtcccggctgcccaagcc
gaggtggtcaccgtcaagccgtcgcaagcagcgccgtccagcgctgcaagcgcggctgtg
gatgtcgcagtgacctccaccacgacggtgccgcagagcactccggctgccgacgctgct
ccagtgactcaggcacgcaagctgtacgcaccggtgcagacgacgctgctcgacgcattg
gctccggccgatgccacagtaccggcatcgtcggcatcggcgcctgctgaaacgccggca
ccgtacaatgcgcctgagcagcctgcagcagtcgcccccgtagctcctgcgaacgtgcag
aagcaggcagacgatgcgcacaagccgacggttgtcgttccggaagctgtgaagccggtg
gctccatcgactgcgaccgaagctcaagagcaggaagacgacaccaacaagccgcgtagc
gatcactga
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