Xanthomonas hortorum: XJ27_04070
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Entry
XJ27_04070 CDS
T05082
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xhr
Xanthomonas hortorum
Pathway
xhr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xhr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XJ27_04070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhr03019
]
XJ27_04070
03009 Ribosome biogenesis [BR:
xhr03009
]
XJ27_04070
Enzymes [BR:
xhr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
XJ27_04070
Messenger RNA biogenesis [BR:
xhr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
XJ27_04070
Ribosome biogenesis [BR:
xhr03009
]
Prokaryotic type
rRNA processing factors
XJ27_04070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ASW45246
LinkDB
All DBs
Position
957282..961019
Genome browser
AA seq
1245 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDY
GAERHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFIS
LAGRYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLDIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLQTWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADIGEILVDTPELYADAQ
EFMQQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAV
DVNSSRATKGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASTKHQREVENK
LQNALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLS
IIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRSALREIENRHASPIIIVADEQLHTPH
YEVTRLRENELGEDSGKPSYQRGTPRKLPVHALTKAQLNIPAAPAVTSIKPSQPAPAREE
APAPVAAAPAPAPVVALPLPAPVTGVVGWLKRIFGGVEPVAPVPESTQRPRQSDPARGNR
NERGDRGGQRRDGRGEARNGGNQQRGNGGNGGNGNGNGANKERRDERRQPANGQSAQNPQ
NGGQAQQQVQVAKPPRNEPQAPKQPQQGQQQKQKPQNQAPRPPRASAQQDGAPSERQQRP
ARQDEGTASAQTLTATAATATTAGVVSAIAETAAPATTHVPANEANPAHPVDVIVTEAHA
DRGTDASADGQAPDAAGDDSANGEGGSRRRRGRRGGRRRRRGAGANGEGGIGADGLETDD
LDGDAEGDLDGDNENEGDEAGTQTHASAAPRAGQPEFDFDDEAAPAAAVRARPESSTPAA
VKPRPVPKERSESQVAADTTSTTAPVSNATPSFERQAAAAPVAAAAEQARGDASVASAAP
VAQSAPAATPAPVAAPTPVQTSVATPAPVVAPASVAASTPAATSTPVATPAAVVTPAPAA
APVERAATTTSATAPESVTQQRQVSSASTDVAAPAAVSPERTAPVAAPAPVQAESVKAET
TPAAAPVHTQAAPAPSSVPAAQAEVVTVKPSQAAPSSAASAAVDVAVTSTTTVPQSTPAA
DAAPVTQARKLYAPVQTTLLDALAPADATVPASSASAPAETPAPYNAPEQPAAVAPVAPA
NVQKQADDAHKPTVVVPEAVKPVAPSTATEAQEQEDDTNKPRSDH
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgctgatcaacgcaacgcaggccgaagagctgcgcgtagcgattgtggac
ggccagaccctgtacgacatcgacatcgaacagccgtccaaggaacaaaagaagtccaac
atctacaagggccgtatcacccggctcgagccctcgctggaagcggcgttcgtggactat
ggcgccgagcgccatggcttcctgccgctgaaggaaatctcccgcgattacttccaggct
ggcgtcgaccacaacaagtcgaccattcgcgagctgttgcgcgaaggccaggaaatcgtg
gtgcaggtcgacaaggaagagcgtggcaacaagggcgccgccctgaccacgtttatttcg
ctggccggccgctacatggtgctgatgcccaattcgccgagcgccggtggcgtctcgcgc
cggatcgaaggcgaagaccgtgccgcgctgaaggaagcgctggacaagctcgatatcccc
gacgacatgggcgtgatcatccgcaccgccggtgtcggacgtgacgccgaagagctgcag
tgggatctggattacctgctgcagacctggaaggcgattgccgaggctgcgctgagcaag
ccggcggcgttcctgatctaccaggaatcgcgcctgatcattcgcgccctgcgcgactac
ctgcgcgccgacatcggcgaaatcctggtcgatacgccggagctgtacgccgacgcccag
gaattcatgcagcaggtgatgccgcaaagcctgcgcaagctcaagcactacaccgacgac
attccgctgttcaaccgcttccagatcgaatcgcagatcgaaggcgcctatgagcgcaat
gtgcggttgccctcgggcggctcgatcgtggtcgaccagaccgaagcgctgactgccgtc
gacgtgaactcctcgcgcgccaccaagggcagtgatatcgaagagaccgcgttccagacc
aatctggaagcggccgaagaagtggcccgtcagttacgcctgcgcgacctgggcggcctg
gtggtgatcgacttcatcgacatggcctcgaccaagcatcagcgcgaagtcgaaaacaag
ttgcagaacgcgctcaagtacgaccgtgcgcgcgtgcagctgggccgtatctcgcgcttc
ggcctgatggaaatgagccgccagcgcctgcgtccgagcctgggcgaatccagccagatc
gtgtgcccgcgttgcgacggccatggccgcatgcgcagcgtcgagtcgttgtcgctgtcg
atcatccgcgtagccgaagagcacgcaatgaaggagaacacaggacaggtgctggtgcag
gccccggtggagatcgccaattacctgctcaacgaaaagcgcagcgcgctgcgcgagatc
gaaaatcgtcatgcctcgccgatcatcatcgtcgccgacgagcagctgcacactccgcat
tacgaagtcacgcgtctgcgtgagaacgagctgggcgaagacagcggcaagccgagctat
cagcgtggtacgccgcgcaagttgccggtgcatgcgctgaccaaggcgcagttgaacatt
ccggcagcgcctgcagtgacctcgatcaagccgagccagccggctccggcgcgtgaggag
gcccctgccccggtcgctgcagcacctgccccggctccggtcgtcgctctgccacttcct
gcgccggtcaccggcgtggtcggttggctgaagcggatcttcggtggtgtcgagccagtg
gctccggtccccgagtcgacccagcgtccgcgccagagcgacccagcccgtggcaaccgc
aacgagcgtggcgatcgtggtggtcagcgccgagatggccgtggtgaagcgcgtaacggc
ggcaatcagcagcgtggcaatggtggtaacggcggcaatggcaacggcaatggcgccaac
aaggagcgtcgcgatgagcgtcgccagcctgccaatggccagagcgcgcagaacccgcag
aatggcggtcaggcgcagcagcaggtgcaggtcgccaagccgccgcgcaacgaaccgcag
gcacccaagcaaccgcagcagggccagcagcaaaagcagaagccgcagaatcaggctccg
cgtcccccgcgtgcatctgcacagcaggacggcgcgccgtccgagaggcagcagcgcccc
gcccgtcaggacgaaggcacggcttcggcacagacgctgaccgcaactgccgcaaccgcg
acgactgccggtgtggtttcggcaatcgccgaaaccgccgcgccggcgacgacgcacgtt
cccgccaatgaagccaacccggcacacccggtcgacgtcatcgtgaccgaagcgcatgcc
gaccgtggcactgacgccagtgcagacgggcaggcaccggatgcagcaggcgatgattcg
gccaatggcgaaggcggcagccgtcgtcgtcgcggccgtcgtggcggccgtcgtcgtcgt
cgtggtgctggcgcaaatggtgaaggtggtatcggcgccgatggtctggaaacggacgat
ctggatggcgatgccgaaggcgatctcgatggcgacaacgagaacgaaggcgacgaagcc
ggcacgcagacgcatgcctccgctgcaccgcgcgccggccagccggagttcgacttcgac
gatgaagccgcgcctgcagcagctgtgcgcgccaggccggagtccagcactccagcagca
gtgaagccacgtccggtgccgaaggagcgttcggaaagccaggtagcggccgacactacg
tcgactactgcaccggtctccaatgccacgccgtccttcgaacggcaggctgcggcggct
ccggttgcagctgcagccgagcaggcgcgtggcgatgcttcagttgcctctgcggcacct
gttgcgcaatcggcaccggcggcgacacctgctccggttgcagctccgacgcccgtgcag
acttcggttgctactccggctccagttgtggctccggcttcggtcgccgcctcgacgccg
gctgccacctcgacccccgttgcaactcctgccgcggtcgtgacgcctgctcctgcagct
gcgcctgtcgagcgtgccgctacgacgacgtcggcgactgcgccggagtcggttacgcag
cagaggcaggtgtcgtcggcatcgactgacgttgcagcacccgctgcggtcagcccggaa
cgcactgcacccgtcgcggccccggcaccagtgcaagcggagtcggtgaaagccgagaca
actccggctgctgctccagtgcacacgcaagcagcacctgcgccttcgagcgtcccggct
gcccaagccgaggtggtcaccgtcaagccgtcgcaagcagcgccgtccagcgctgcaagc
gcggctgtggatgtcgcagtgacctccaccacgacggtgccgcagagcactccggctgcc
gacgctgctccagtgactcaggcacgcaagctgtacgcaccggtgcagacgacgctgctc
gacgcattggctccggccgatgccacagtaccggcatcgtcggcatcggcgcctgctgaa
acgccggcaccgtacaatgcgcctgagcagcctgcagcagtcgcccccgtagctcctgcg
aacgtgcagaagcaggcagacgatgcgcacaagccgacggttgtcgttccggaagctgtg
aagccggtggctccatcgactgcgaccgaagctcaagagcaggaagacgacaccaacaag
ccgcgtagcgatcactga
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