Xanthomonas oryzae pv. oryzicola BLS256: XOC_2565
Help
Entry
XOC_2565 CDS
T01873
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xor
Xanthomonas oryzae pv. oryzicola BLS256
Pathway
xor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XOC_2565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xor03019
]
XOC_2565
03009 Ribosome biogenesis [BR:
xor03009
]
XOC_2565
Enzymes [BR:
xor01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
XOC_2565
Messenger RNA biogenesis [BR:
xor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
XOC_2565
Ribosome biogenesis [BR:
xor03009
]
Prokaryotic type
rRNA processing factors
XOC_2565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AEQ96683
UniProt:
G7TGT9
LinkDB
All DBs
Position
2615425..2619147
Genome browser
AA seq
1240 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDY
GAERHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVEKEERGNKGAALTTFIS
LAGRYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLDIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLQTWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQ
EFMKQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAV
DVNSSRATKGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVENK
LQNALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLS
IIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPH
YEVTRLRENELGEDNGKPSYQRGTPRKLPVHALTKAQLNIPAPPAVTSIKPSQPAPVREE
TPAAVAPVAAPAPVVTVPIPAPVTGVVGWLKRIFGGVEPLAPAPESIPRPRQNDAGRNHR
NERGERGGQRRDGRDARHGGHSGNQQRGNGNGANKERRDERRQPANGQGAQNGAQAQQQA
QTPKPPRNEAQAPKQQQPQQAQQQKPKPQNQTPRPPRTPAQQDGAQAERQPRPARQDEGM
AAAQTVTSTAAMATTSSVVAAITDAAAPATAQTNANEAAQAHAVDVTVSAPTADPGADAS
VAAPAQDATGDDAANGEGGSRRRRGRRGGRRRRRRGAGANGEGGASVDGREGDDLDGDAD
NDLDSDSEGDAAAAQAHASAAPRAGQPEFDFDDDAPAPTVRAKPEPTAKAAAKPRPVPKE
RAEPQVGNDTSSTTAPVSNTVPASQPPVATPVAKADTDHERPAAPTVAADAPAKPTPAAT
ASTAVNADVAATQAVEQRPAPVAQHAPAAPAPVAAPAPVAAPASVASTPVPAVAAVAPVA
ETASTAPVAAPSAPAPTVASPVSNVAATSTQHQPLGSASARAAASDTDKAAAPNADRQQR
AAAADVATPATTQAAPVQTTPVKQTADLSAPVAAMPAAQAEVVTATSPHAEPPAAQVPSS
EAAVTATSTLVQASPTADATPVRKRYAPVQTTMLDALSPNDAATSAPAASEHPAPAAAAQ
EAVAGKSKPTVVVSEVKPVAPSTEADKAQDDDSNKPRGDH
NT seq
3723 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgctgatcaacgcaacgcaggccgaagagctgcgcgtggcaattgtggac
ggccagaccctgtacgacatcgacatcgaacagccgtccaaggaacaaaagaagtccaac
atctataagggccgtattacccggctcgagccgtctctggaagcggcgttcgtggactat
ggcgccgagcgccatggcttcttgccgctgaaggaaatttcccgcgattatttccaggcc
ggcgtcgaccacaacaagtcgaccattcgcgagctgctgcgcgaaggccaggaaatcgtg
gtgcaggtcgagaaggaagaacgcggcaacaagggcgctgccctgaccacgttcatctcg
ctggccggtcgctacatggtgctgatgcccaattcgccgagcgccggtggcgtctcacgc
cgcatcgaaggcgaagaccgcgccgcactgaaggaagcgctggacaagctggatattccg
gacgacatgggcgtgatcatccgcaccgccggtgtgggccgtgatgccgaagagctgcag
tgggatctggactatctgctgcagacctggaaggcaattgccgaggctgcgctgagcaag
ccggccgcgttcctgatctaccaggaatcgcgcctgatcatccgcgccctgcgcgactac
ctgcgcgccgacgtcggcgagatcctggtcgatacaccggagctgtacgccgacgcccag
gaattcatgaagcaggtaatgccgcaaagcctgcgcaagctcaagcactacaccgacgac
atcccgctgttcaatcgcttccagatcgaatcgcagatcgaaggcgcctatgagcgcaac
gtgcgcctgccctcgggcggctcgatcgtggtcgatcagaccgaagcgctgactgcggtc
gacgtcaactcctcgcgcgccaccaagggcagcgacatcgaagaaaccgcgttccagacc
aacctggaagcggccgaagaagtcgcacgccagctgcgcctgcgcgacctgggtggcctg
gtggtcatcgacttcatcgacatggcctcgtccaagcatcagcgcgaagtcgaaaacaag
ctgcagaacgcgctcaagtacgaccgcgcccgcgtgcagctgggccgtatctcgcgcttc
ggcctgatggaaatgagccgccagcgcctgcgtccgagcctgggcgaatccagccagatc
gtctgcccgcgttgcgatggccatggccgcatgcgcagcgtcgagtcgctgtcgctgtcg
atcatccgcgtggccgaagaacacgcgatgaaggaaaacaccggccaggtgctggtccag
gcgccagtggaaatcgccaactacctgctcaacgaaaagcgcagcgcgctgcgcgagatc
gaacaacgtcacgagtcgccgatcatcatcgtcgccgacgaacagttgcacaccccgcac
tacgaagtcacgcgcctgcgcgaaaatgagttgggcgaagacaacggcaagccgagctat
cagcgcggcaccccgcgcaagctgccggtgcacgcgctgaccaaggcgcaattgaatatc
ccggcacctccggcagtcacctcgatcaagccgagccagccggcgccggtgcgtgaagag
acccctgccgcggtggcgcccgtcgccgctccggcaccggtggtgactgtgccgattccg
gccccggtcaccggcgtggtcggctggttgaagcgcatcttcggcggcgtcgagccgctc
gctcctgctcccgagtcgattccgcgcccgcgtcagaacgatgccggccgcaatcaccgt
aacgaacgcggagagcgtggcggtcaacgtcgcgacggtcgcgatgcgcgtcacggcggt
catagcggcaaccagcagcgcggcaatggcaatggcgccaacaaggaacgccgtgacgag
cgccgccagccagccaacggccagggcgcgcagaacggtgcacaggcacagcaacaggcg
cagacgcccaagccgccgcgcaatgaagcgcaggcaccgaagcaacagcagccgcagcag
gctcagcaacagaagcccaagccgcagaaccagaccccgcgtccgccgcgtacacctgca
cagcaggacggcgcgcaggccgagcgtcagccgcgtccggcacgtcaggatgaaggcatg
gccgcagcacagaccgtcacctcgactgccgcaatggcaacgacgtcgagcgtggtggct
gccattaccgatgccgctgcacctgccactgcgcagaccaacgctaacgaagcagcgcag
gcgcatgcggttgacgtcacggtgagcgcgcccaccgctgatcccggtgcagacgcaagt
gtcgctgcaccggcccaggatgccacgggcgacgatgcagccaatggcgaaggcggaagc
cgtcgtcgccgcggtcgtcgtggtggccgtcgtcgtcgtcgtcgtggcgctggtgccaac
ggcgaaggcggggcaagcgtcgatggtcgggaaggcgacgatctggacggtgatgccgac
aacgatctcgacagcgacagcgaaggcgacgccgccgctgctcaggcgcatgcctcggcc
gcaccgcgcgccggccagccggagttcgatttcgacgacgacgcaccggcacccaccgtc
cgtgccaagcccgaacccactgcgaaggcagctgccaaaccgcgcccggttcccaaggag
cgcgcggagccgcaagtcggcaacgacacgtcgtcgaccactgcgccggtttccaacacc
gtgccggcatcgcagccgccagtagcaacacccgttgccaaggctgacaccgaccacgag
cgccccgctgcgccgaccgttgccgcagatgcgcctgccaaacccacgcccgctgccaca
gcgtcgacggccgtcaacgcagatgttgcggcaacgcaagcggtggaacagcgcccggct
ccggtcgcgcaacacgctccagctgccccggcaccggttgctgctccggcaccggttgct
gctccggcatccgtggcatctacgccggtaccggctgttgctgctgtagctcccgtcgcc
gagaccgcatcgacggcaccggtcgccgctccgtcggctccggcaccaactgtcgcatcg
cctgtgtcaaacgttgctgcaacaagcacacagcaccagcctttgggttcggcgtctgca
cgtgctgctgcgtctgacacggacaaggctgcggcaccgaacgctgaccggcagcagcgc
gctgctgcggcggacgttgcaacgcctgcgacgacgcaagcggcaccggtacagaccaca
cctgtaaagcagactgccgatctatcggcacctgtggcagcgatgccggctgcacaggcc
gaggtggttacggccacgtctccacacgccgaaccgcctgctgcgcaggtgccatcgtcc
gaggcggcagtgactgctacatcgacgctcgtgcaggcaagcccgactgcagacgctacg
ccagtgcggaagcggtatgccccggtgcaaaccaccatgctcgatgcattgagcccgaac
gatgctgcaacgtcagcacccgcggccagcgaacatcctgcgcccgctgcagcagcgcag
gaggcagtggcaggcaagtccaagccgacggtggttgtatccgaagtcaagcctgttgcc
ccatcgacggaggccgacaaggcgcaggatgatgacagcaacaagccgcgtggcgatcac
tga
DBGET
integrated database retrieval system
