Xanthomonas oryzae pv. oryzicola CFBP7342: BE73_12410
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Entry
BE73_12410 CDS
T03868
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xoz
Xanthomonas oryzae pv. oryzicola CFBP7342
Pathway
xoz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xoz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BE73_12410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xoz03019
]
BE73_12410
03009 Ribosome biogenesis [BR:
xoz03009
]
BE73_12410
Enzymes [BR:
xoz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BE73_12410
Messenger RNA biogenesis [BR:
xoz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BE73_12410
Ribosome biogenesis [BR:
xoz03009
]
Prokaryotic type
rRNA processing factors
BE73_12410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AJQ87777
LinkDB
All DBs
Position
2622371..2626108
Genome browser
AA seq
1245 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDY
GAERHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVEKEERGNKGAALTTFIS
LAGRYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLDIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLQTWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQ
EFMKQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAV
DVNSSRATKGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVENK
LQNALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLS
IIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPH
YEVTRLRENELGEDNGKPSYQRGTPRKLPVHALTKAQLNIPAPPAVTSIKPSQPAPVREE
TPAAVAPVAAPAPVVTVPIPAPVTGVVGWLKRIFGGVEPLAPAPESIPRPRQNDAGRNHR
NERGERGGQRRDGRDARHGGHSGNQQRGNGNGANKERRDERRQPANGQGAQNGAQAQQQA
QTPKPPRNEAQAPKQQQPQQAQQQKPKPQNQTPRPPRTPAQQDGAQAERQPRPARQDEGM
AAAQTVTSTAAMATTSSVVAAITDAAAPATAQTNTNEAAQAHAVDVTVSAPTADPGADAS
VAAPAQDAAGDDAANGEGGSRRRRGRRGGRRRRRGAGANGEGGASVDGLEGDDLDGDADN
DLDSDSEGDAAAAQAHASAAPRAGQPEFDFDDDAPAPTVRAKPEPTAKAAAKPRPVPKER
AEPQVGNDTSSTTAPVSNTVPASQPPVATPVAKADTDHERPAAPTVAADAPAKPAPAATA
STAVNADVAATQAVEQRPAPVAQHAPAAPAPVAAPAPVAAPAPVAAPASVASTPVPAVAA
VAPVAETASTAPVAAPSAPAPTVASPVSNVAATSTQHQPLGSASARAAASDTDKAAAPNA
DRQQRAAAADVATPATTQAAPVQTTPVKQTADLSAPVAAMPAAQAEVVTATSPHAEPPAA
QVPSSEAAVTATSTLVQASPTADATPVRKRYAPVQTTMLDALSPNDAATSAPAASEHPAP
AAAAQEAVAGKSKPTVVVSEVKPVAPSTEADKAQDDDSNKPRGDH
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgctgatcaacgcaacgcaggccgaagagctgcgcgtggcaattgtggac
ggccagaccctgtacgacatcgacatcgaacagccgtccaaggaacaaaagaagtccaac
atctataagggccgtattacccggctcgagccgtctctggaagcggcgttcgtggactat
ggcgccgagcgccatggcttcttgccgctgaaggaaatttcccgcgattacttccaggcc
ggcgtcgaccacaacaagtcgaccattcgcgagctgctgcgcgaaggccaggaaatcgtg
gtgcaggtcgagaaggaagaacgcggcaacaagggcgctgccctgaccacgttcatctcg
ctggccggtcgctacatggtgctgatgcccaattcgccgagcgccggtggcgtctcacgc
cgcatcgaaggcgaagaccgcgccgcactgaaggaagcgctggacaagctggatattccg
gacgacatgggcgtgatcatccgcaccgccggtgtgggccgtgatgccgaagagctgcag
tgggatctggactatctgctgcagacctggaaggcaattgccgaggctgcgctgagcaag
ccggccgcgttcctgatctaccaggaatcgcgcctgatcatccgcgccctgcgcgactac
ctgcgcgccgacgtcggcgagatcctggtcgatacaccggagctgtacgccgacgcccag
gaattcatgaagcaggtaatgccgcaaagcctgcgcaagctcaagcactacaccgacgac
atcccgctgttcaatcgcttccagatcgaatcgcagatcgaaggcgcctatgagcgcaac
gtgcgcctgccctcgggcggctcgatcgtggtcgatcagaccgaagcgctgactgcggtc
gacgtcaactcctcgcgcgccaccaagggcagcgacatcgaagaaaccgcgttccagacc
aacctggaagcggccgaagaagtcgcacgccagctgcgcctgcgcgacctgggtggcctg
gtggtcatcgacttcatcgacatggcctcgtccaagcatcagcgcgaagtcgaaaacaag
ctgcagaacgcgctcaagtacgaccgcgcccgcgtgcagctgggccgtatctcgcgcttc
ggcctgatggaaatgagccgccagcgcctgcgtccgagcctgggcgaatccagccagatc
gtctgcccgcgttgcgatggccatggccgcatgcgcagcgtcgagtcgctgtcgctgtcg
atcatccgcgtggccgaagaacacgcgatgaaggaaaacaccggccaggtgctggtccag
gcgccagtggaaatcgccaactacctgctcaacgaaaagcgcagcgcgctgcgcgagatc
gaacaacgtcacgagtcgccgatcatcatcgtcgccgacgaacagttgcacaccccgcac
tacgaagtcacgcgcctgcgcgaaaatgagttgggcgaagacaacggcaagccgagctat
cagcgcggcaccccgcgcaagctgccggtgcacgcgctgaccaaggcgcaattgaatatc
ccggcacctccggcagtcacctcgatcaagccgagccagccggcgccggtgcgtgaagag
acccctgccgcggtggcgcccgtcgccgctccggcaccggtggtgactgtgccgattccg
gccccggtcaccggcgtggtcggctggttgaagcgcatcttcggcggcgtcgagccgctc
gctcctgctcccgagtcgattccgcgcccgcgtcagaacgatgccggccgcaatcaccgt
aacgaacgcggagagcgtggcggtcaacgtcgcgacggtcgcgatgcgcgtcacggcggt
catagcggcaaccagcagcgcggcaatggcaatggcgccaacaaggaacgccgtgacgag
cgccgccagccagccaacggccagggcgcgcagaacggtgcacaggcacagcaacaggcg
cagacgcccaagccgccgcgcaatgaagcgcaggcaccgaagcaacagcagccgcagcag
gctcagcaacagaagcccaagccgcagaaccagaccccgcgtccgccgcgtacacctgca
cagcaggacggcgcgcaggccgagcgtcagccgcgtccggcacgtcaggatgaaggcatg
gccgcagcacagaccgtcacctcgactgccgcaatggcaacgacgtcgagcgtggtggct
gccattaccgatgccgctgcacctgccactgcgcagaccaacactaacgaagcagcgcag
gcgcatgcggttgacgtcacggtgagcgcgcccaccgctgatcccggtgcagacgcaagt
gtcgctgcaccggcccaggatgccgcgggcgacgatgcagccaatggcgaaggcggaagc
cgtcgtcgccgcggtcgtcgtggtggccgtcgtcgtcgtcgtggcgctggtgccaacggc
gaaggcggagcaagcgtcgatggtctggaaggcgacgatctggacggtgatgccgacaac
gatctcgacagcgacagcgaaggcgacgccgccgctgctcaggcgcatgcctcggccgca
ccgcgcgccggccagccggagttcgatttcgacgacgacgcaccggcacccaccgtccgt
gccaagcccgaacccactgcgaaggcagctgccaaaccgcgcccggttcccaaggagcgc
gcggagccgcaagtcggcaacgacacgtcgtcgaccactgcgccggtttccaacaccgtg
ccggcatcgcagccgccagtagcaacacccgttgccaaggctgacaccgaccacgagcgc
cccgctgcgccgaccgttgccgcagatgcgcctgccaaacccgcgcccgctgccacagcg
tcgacggccgtcaacgcagatgttgcggcaacgcaagcggtggaacagcgcccggctccg
gtcgcgcaacacgctccagctgccccggcaccggttgctgccccggcaccggttgctgct
ccggcaccggttgctgctccggcatccgtggcatctacgccggtaccggctgttgctgct
gtagctcccgtcgccgagaccgcatcgacggcaccggtcgccgctccgtcggctccggca
ccaactgtcgcatcgcctgtgtcaaacgttgctgcaacaagcacacagcaccagcctttg
ggttcggcgtctgcacgtgctgctgcgtctgacacggacaaggctgcggcaccgaacgct
gaccggcagcagcgcgctgctgcggcggacgttgcaacgcctgcgacgacgcaagcggca
ccggtacagaccacacctgtaaagcagactgccgatctatcggcacctgtggcagcgatg
ccggctgcacaggccgaggtggttacggccacgtctccacacgccgaaccgcctgctgcg
caggtgccatcgtccgaggcggcagtgactgctacatcgacgctcgtgcaggcaagcccg
actgcagacgctacgccagtgcggaagcggtatgccccggtgcaaaccaccatgctcgat
gcattgagcccgaacgatgctgcaacgtcagcacccgcggccagcgaacatcctgcgccc
gctgcagcagcgcaggaggcagtggcaggcaagtccaagccgacggtggttgtatccgaa
gtcaagcctgttgccccatcgacggaggccgacaaggcgcaggatgatgacagcaacaag
ccgcgtggcgatcactga
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