Xanthomonas prunicola: MUG10_21205
Help
Entry
MUG10_21205 CDS
T08368
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xpr
Xanthomonas prunicola
Pathway
xpr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xpr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MUG10_21205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xpr03019
]
MUG10_21205
03009 Ribosome biogenesis [BR:
xpr03009
]
MUG10_21205
Enzymes [BR:
xpr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MUG10_21205
Messenger RNA biogenesis [BR:
xpr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MUG10_21205
Ribosome biogenesis [BR:
xpr03009
]
Prokaryotic type
rRNA processing factors
MUG10_21205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
USJ00406
LinkDB
All DBs
Position
complement(4833939..4837634)
Genome browser
AA seq
1231 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDY
GAERHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFIS
LAGRYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLDIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLQTWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQ
EFMQQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAV
DVNSSRATKGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVENK
LQNALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLS
IIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPH
YEVTRLRENELGEDSGKPSYQRGTPRKLPVHALTKAQLNIPAPPAVTSIKPSQPAPVREE
APAPVAPVAAPAPVVTVPIPAPVTGVVGWLKRIFGGVEPVAPAPESTPRPRQNDAGRNNR
NERGERGGQRRDGRDARNGGNGGNQQRGNGGSGNGANKERRDERRQPASGQGAQNGAQAQ
QQVQVPKPPRNEAQVPKQQPPQQSQQQKSKPQNQTPRPPRAPAQQDGAPAERQPRPARQD
AGTAAAQTVTSTAATAATSSVVAAIADAAAPTTAQINANEAAQAHPVDVTVSESTADRGA
DASAAAPTPDAAGDDAANGEGGSRRRRGRRGGRRRRRGAGANGEGGASADGLEGDDLDGD
ADNDLDGDSEGDDAGTHAQASAAPRAGQPEFDFDDDAPTPAVRAKSEPIAQAAAKPRPVP
KERAEPHVGSDTSSTTAPVSNTVPAAQPPAATPGATAEADHERPATPTVAADAPAKPAPA
AIASTAVNADVAAVQAVEQRSAPVAQQAPATPVPVAASAPVASTPAPPVAPVAETASTAP
VAAASAPVPTAATPVTNEAPASAQHQRLPSVSATAGADADKAAVPMADQQQRAASADVAT
PAVQAATVQKAAATPAANLSAAVAATPASQAAVVTVASPHAEPSAPKAPSAEAAATATSA
VVQTSPSADATPVHKPYAPVQTTMLDALSPTDAATSATSASEPPAPPATAQELEADKPKP
TVVVSEVKPVAPSIETDKAQDDDSNKPRGDH
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgctgatcaacgcaacgcaggccgaagagctgcgcgtggcgattgtggac
ggccagaccctgtacgacatcgatatcgaacagccgtccaaggaacagaagaagtccaac
atctacaagggccgtatcacccggctcgagccctcactggaagcggcgttcgtggactat
ggcgccgagcgtcatggcttcctgccgctgaaggaaatttcccgcgattatttccaggct
ggggtcgaccacaacaagtcgaccattcgcgagttgctgcgcgaaggccaggaaattgtg
gtgcaggtcgacaaggaagaacgcggcaacaagggcgctgccctgaccacgttcatctcg
ctggctggccgctacatggtgctgatgcccaattcgccgagcgccggtggcgtttcgcgc
cggatcgaaggcgaagaccgcgccgcgctgaaggaagcgctggacaagctcgatatcccc
gacgacatgggcgtgatcatccgcaccgccggtgtgggccgtgatgccgaagagctgcag
tgggatctggactatctgctgcagacctggaaggcgattgccgaggctgcgctgagcaag
ccggccgcgttcctgatctaccaggaatcgcgcctgatcatccgcgcactgcgcgactac
ctgcgcgccgacgtcggcgagatcctggtcgatacgccggagctgtatgccgacgcccag
gaattcatgcagcaggtgatgccgcagagcctgcgcaaactcaagcactacaccgacgac
attccgctgttcaaccgcttccagatcgaatcgcagatcgaaggcgcctatgaacgcaac
gtgcgcctgccctcgggcggctcgatcgtggtcgaccagaccgaagcgctgaccgctgtc
gatgtgaactcctcccgcgccaccaagggcagcgacatcgaagaaaccgcgttccagacc
aatctggaagcggccgaagaagtggctcgccagctgcgcctgcgcgacctcggcggcctg
gtggtcatcgacttcatcgacatggcctcgtccaagcaccagcgcgaagtcgaaaacaag
ctgcagaacgcgctcaagtacgaccgtgcccgcgtgcagctgggccgcatctcgcgtttc
ggcctgatggaaatgagccgtcagcgtctgcgtccgagcctgggcgaatctagccagatt
gtctgcccgcgttgcgatggccatggccgcatgcgcagcgtcgagtcgctgtcgctgtcg
atcatccgcgtggccgaagagcacgccatgaaggaaaacaccggacaggtgctggtccag
gccccggtggaaatcgccaactacctgctcaacgaaaagcgcagcgcgctgcgtgagatc
gagcagcgccacgagtcgccgatcatcatcgtcgccgacgagcagctgcacaccccgcac
tacgaagtcacgcgcctgcgcgagaacgagctgggcgaagacagcggcaagccgagctac
cagcgcggcaccccgcgcaagctgccggtgcatgcgctgaccaaggcgcaattgaacatc
ccggcgcctccagcagtgacttcgatcaagccgagccagccggcgccggtgcgtgaagag
gctcctgccccggtggcgcctgtcgccgctccggcaccggtggtgaccgtgccgattccg
gcaccggtcaccggcgtggttggctggttgaagcgcatcttcggcggcgtcgagccggtc
gctcctgctcccgagtcgactccgcgcccgcgtcagaacgatgccggccgcaataaccgg
aacgaacgcggcgagcgtggcggtcaacgtcgcgatggccgcgatgcccgtaacggcggc
aatggtggcaaccagcagcgcggcaatggcggcagtggcaatggcgccaacaaggaacgc
cgtgacgagcgccgccagccggccagcggccagggcgcgcagaacggtgcacaggcgcag
caacaggtgcaggtgcccaagccgccgcgcaatgaagcacaggtaccgaagcaacagccg
ccgcagcagtctcagcagcagaagtccaagccgcagaaccagacgccgcgtccaccgcgt
gcacctgcacagcaggacggcgcgccagccgaacgtcagccgcgtccggcacggcaggat
gcaggcactgcagcagcacagacggtcacctcgactgccgcaacagcggcgacgtcgagc
gtggtggctgccattgccgatgcggctgcacctaccactgcgcagatcaacgcgaacgaa
gcagcgcaggcgcatccggttgacgtcacggtgagcgagtccaccgctgatcgcggtgcc
gacgcaagtgcggctgcgccgaccccggatgccgcgggcgacgatgcagccaatggcgaa
ggcggaagccgtcgccgccgcggtcgtcgtggtggccgtcgccgtcgtcgtggcgctggt
gccaacggcgaaggcggcgccagcgccgatggtctggaaggcgacgatctggacggcgat
gccgacaacgatctcgatggcgacagcgaaggtgacgacgctggtactcatgcgcaggcc
tctgccgcaccgcgcgccggccagcctgaattcgacttcgatgacgacgcaccgacacct
gcggtgcgcgccaagtccgaacccattgcacaggcagccgccaagccgcgcccggttccc
aaggagcgtgcggagccgcacgtcggcagcgacacgtcctcaaccactgcgccggtttcc
aacaccgtgccggcagcgcagccgccagcagcaacacccggtgccacggctgaggcagac
cacgagcgccctgcgacgccgaccgtggccgcagatgcacctgccaagcccgcgcccgct
gccatcgcgtcgacggccgtcaacgctgatgttgcggcagtgcaagcagtggaacagcgt
tcggctccggtcgcgcagcaagcccccgctactccggtacccgttgctgcgtcggcaccc
gtggcatccacgccggcaccgcctgtggctcccgtcgccgagacggcatcgaccgcaccg
gtcgccgctgcgtcggctccggtaccaactgccgcaacgcctgtgacaaacgaggctccg
gcaagcgcccagcaccagcggttgccttccgtatcggcaaccgctggtgctgacgccgac
aaggctgcggtaccgatggccgaccagcagcagcgcgctgcttcggcggacgttgcaacg
cctgcggtgcaagcggcaacggtgcagaaggcagctgcaacgcctgctgccaatctatcg
gcagctgtagcagcgacgccggcttcgcaggccgcagtagtcacggtggcctcgccgcac
gccgaaccgtctgctccaaaggcgccatcggccgaagccgcagcgactgctacatcggcc
gtcgtgcagaccagcccgagtgccgacgctacgcccgtgcacaagccgtatgccccggtg
cagacaaccatgctcgatgcgttgagcccgaccgatgctgcgacgtcagcgacctcggcc
agcgagcctccggcgccacctgccacagcgcaggagttggaggcagacaagcccaagccg
acggtggttgtgtccgaagtaaagcctgttgccccatcgatcgagaccgacaaggcgcag
gatgatgacagcaacaaaccgcgtggcgatcactga
DBGET
integrated database retrieval system
