Yersinia alsatica: N0H69_11835
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Entry
N0H69_11835 CDS
T08521
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
yas
Yersinia alsatica
Pathway
yas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N0H69_11835 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yas03019
]
N0H69_11835 (rne)
03009 Ribosome biogenesis [BR:
yas03009
]
N0H69_11835 (rne)
Enzymes [BR:
yas01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
N0H69_11835 (rne)
Messenger RNA biogenesis [BR:
yas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
N0H69_11835 (rne)
Ribosome biogenesis [BR:
yas03009
]
Prokaryotic type
rRNA processing factors
N0H69_11835 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
HC2
Motif
Other DBs
NCBI-ProteinID:
UWM43425
LinkDB
All DBs
Position
complement(2691810..2695280)
Genome browser
AA seq
1156 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSADAL
QWDLSFRLKHWDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELA
KEHIAALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQ
TPHYSVLRVRKGEEVPSLSYLLPQLHEAEMAQPQEEAAIERKRPEQPALATFSLPTEVPP
EATPATATVKPTVAPQAAASTTPEQPGFFSRLFSGLKGIFAGSAEAEVKPVEAEKTETSE
NRRNDRRNPRRQNNGRKDRNDRTPREGRDNSGRDNTNRDNSNREGREDQRRNKRPTQQAA
APQAQTEVVDADKAQREEQQPQRRGDRQRRRQDDKRQAPQDVKAKVDVAEVSVVEEVQQP
EQEERQQVMQRRQRRQLNQKVRIQSANDELNVLESPASEPVANIAAPIVQEEVKLLPQAT
PQADDDVANDRNANNENGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSAMPLAGAFASP
EMASGKVWVRYPVAQPIEQAAFVENPVEEQLPVEQVQEVAVAAVTTPMIAAPVVVAPVVT
TVAEVAAPAPTPVASQHKPGGSSSSAAAVPGRAPVVVEPAIAVEAVAPVAEIAPETEAIA
AIAPAPTAVEPVVEETVVEETVAAETVVEETIAPAAVVEETTVEETAVEATVAEEVAVEE
TVVAAPAPEVIAEKAPVEETAATETPVAEVAAEEQIASETVAENVTEEASVTEPVTDAAP
VVVSQQPVVAQPDGVLFKHYASAPMTKAPAPDYAPASPAQGHWERPAFDFAGKGSAGGHA
AATQATAPATKPQSVD
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaactcagcaagaagagttgcgtgttgcccttgtagat
ggacagcggctgtatgatttggatattgaaagcccaggtcatgaacagaaaaaagcgaat
atttacaaaggcaaaatcacccgaatcgaacccagtctggaagccgcttttgttgattac
ggcgctgaacgacatggtttcctcccactaaaagaaatttctcgcgaatatttccctagt
aattattcctcccatggccgcccaaacatcaaagatgtgctgcgcgaaggccaggaagtt
attgttcaggttgataaagaagagcgcggtaataaaggtgctgcactgacgacgtttatc
agtctggccggtagttatttagttctgatgccaaacaacccacgtgccggtggtatttct
cgccgcatcgaaggtgatgaccgtactgaactgaaagaagccttatcctccctgcaattg
cctgatggcatgggtctgattgtgcgtaccgcaggtgttggtaaatctgctgatgcgctg
caatgggacttatcattccgtcttaagcactgggatgcgataaaaaaagccgctgaaggt
cgccctgcgccattcttgattcatcaggaaagtaacgtgattgtccgtgctttccgtgat
tatctgcgcccggacatcggcgaaatcctgatcgataacccaaaagttctcgaactggct
aaagagcatatcgctgcactgggtcgccctgatttcagcagcaaaatcaaattgtatagt
ggtgaaattccattattcagccactaccagattgagtcacagattgaatctgcattccaa
cgtgaagtgcgtctgccttccggtggctctatcgttatcgataccacagaagccttgacc
gcgattgatatcaactccgcgcgagcaactcgtggtggcgatatcgaagaaaccgctttc
aataccaaccttgaagcggcagatgaaattgcccgtcagttacgtttacgtgacttgggt
ggcctgattgttatcgactttatcgatatgaccccggtgcgccaccagcgtgaagtggaa
aaccggttacgtgatgccgtccgtcaagaccgcgcgcgtatccagattggccgcatctca
cgctttggtttactggaaatgtcccgtcagcgcctcagcccatcactaggtgagtcgagc
caccatgtgtgcccacgctgtagcggtaccggtaccgtacgtgacaacgaatctctgtca
ctttctattctgcgtttgattgaagaagaagcgctgaaagaaaatacccatgaagttcac
gcgattgtgccggtacagattgcctcgtacctgctgaacgaaaaacgtgaatccgttaat
gccatcgaaaaacgccaaggcggtgtacgtgcagtgatcgtgccaaacgatcagatgcaa
accccgcattattcggtgctgcgcgtccgtaaaggtgaagaagttccttctctcagctat
ttgctgccacaactgcatgaagcagaaatggcacaaccgcaggaagaagctgctattgaa
cgcaaacgtccagaacaaccggcgctggcaactttctctctaccaactgaagtgccacca
gaagccacgcctgctactgcgacggttaagccaacagtggcaccacaggctgcggcatca
acaacgccagagcaaccaggcttctttagccgtctgttcagtggcctgaagggtattttc
gctggttcagcagaagctgaagtcaaaccggttgaagctgaaaaaactgaaaccagcgaa
aatcgccgtaatgaccgccgtaatcctcgtcgtcagaacaatggccgtaaagatcgcaat
gaccgcacaccacgtgaaggtcgcgataactcaggccgtgacaacaccaatcgtgataat
tccaatcgcgaaggccgtgaagatcagcgtcgcaacaaacgtcctactcaacaagctgcg
gcaccacaggcacagactgaagtggttgatgcggataaagcacagcgtgaagagcagcag
ccgcagcgtcgtggtgatcgtcaacgtcgtcgtcaagatgacaaacgccaggctccacaa
gatgttaaagctaaagttgatgttgccgaggtcagtgttgtagaagaggtacagcagcca
gagcaagaagaacgtcaacaggtaatgcagcgccgtcagcgtcgccaattgaatcagaaa
gtccgtattcaatctgccaatgatgagctgaatgttttggaaagtcctgctagcgagccg
gtggctaacattgccgcgccaatcgtacaggaagaagtgaaattattgccacaagcaacc
cctcaagctgatgatgacgtggctaacgatcgtaatgccaataatgaaaatggcatgccg
cgtcgttctcgccgttcacctcgccatctgcgtgtcagtggtcagcgtcgtcgtcgctat
cgtgatgaacgttacccgacacagtctgctatgcctctggcgggcgcttttgcctctcca
gaaatggcatcgggcaaagtgtgggtgcgttacccagtagctcaaccgatcgaacaagcc
gcctttgtggaaaatccggttgaagagcaattgcctgtagagcaagtgcaagaagttgca
gtcgccgccgttactactccgatgattgcagcccctgtcgtcgtcgctccggttgttacc
acggttgctgaagttgccgctccggccccaaccccagtagcatcgcagcataaaccaggc
ggttcttcatcttcagctgcagctgtacctggccgcgcacctgtggttgtcgagccagcg
attgctgttgaagctgtagcaccagtggctgaaattgcacctgaaactgaagccatcgcc
gcaattgcacctgctccaaccgcggtcgagcctgtagttgaagagacagtagttgaagaa
actgtagctgcggaaactgtggttgaagagaccatcgcgccagcagctgtagttgaagag
acaacagttgaagagacggcggttgaagccactgtagcggaagaagttgcagtggaagag
acggttgtggcagcaccagcaccagaagttattgctgaaaaagccccagttgaagaaacc
gccgcgactgaaacgccagtggcagaagttgccgctgaagagcaaatcgcgagcgaaact
gttgcagagaatgtgactgaagaagcgagtgttactgaaccagtaaccgatgccgcgcca
gttgtcgtatctcaacagccagtggttgctcagcctgacggcgtgttattcaagcactat
gcttcagctccaatgactaaagctccggcacctgattatgctccggcatcaccagcccaa
ggccattgggaacgtccagcctttgattttgcaggtaaaggctctgcgggtggtcatgct
gcagcaacgcaggcaacagcaccagcgacaaaaccacaatcggtcgattaa
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