KEGG Modules

Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:scia00010 scia01200 scia01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH:scia00010 scia01200 scia01230 scia01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH:scia00010 scia00020 scia01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:scia00010 scia00020 scia00620 scia00785 scia01200 scia01210 scia01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH:scia00020 scia01200 scia01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:scia00020 scia01200 scia01210 scia01230 scia01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:scia00020 scia01200 scia01210 scia01100]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:scia00030 scia01200 scia01230 scia01100 scia01120]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH:scia00030 scia00230 scia01200 scia01230 scia01100]

Other carbohydrate metabolism
M00549 Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:scia00520 scia01250 scia01100]
M00909 UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:scia00520 scia01250 scia01100]
M00012 Glyoxylate cycle [PATH:scia00630 scia01200 scia01100 scia01110]

Energy metabolism
Carbon fixation
Methane metabolism
Nitrogen metabolism
Sulfur metabolism
M00176 Assimilatory sulfate reduction, sulfate => H2S [PATH:scia00920 scia01100 scia01120]

Photosynthesis
ATP synthesis
M00151 Cytochrome bc1 complex respiratory unit [PATH:scia00190 scia01100]
M00155 Cytochrome c oxidase, prokaryotes [PATH:scia00190 scia01100]
M00416 Cytochrome aa3-600 menaquinol oxidase [PATH:scia00190 scia01100]
M00157 F-type ATPase, prokaryotes and chloroplasts [PATH:scia00190 scia01100]

Lipid metabolism
Fatty acid metabolism
M00082 Fatty acid biosynthesis, initiation [PATH:scia00061 scia01212 scia01100]
M00083 Fatty acid biosynthesis, elongation [PATH:scia00061 scia01212 scia01100]
M00086 beta-Oxidation, acyl-CoA synthesis [PATH:scia00061 scia00071 scia01212 scia01100]
M00087 beta-Oxidation [PATH:scia00071 scia01212 scia01100]

Sterol biosynthesis
Lipid metabolism
Nucleotide metabolism
Purine metabolism
M00048 De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:scia00230 scia01100]
M00049 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:scia00230 scia01232 scia01240 scia01100]
M00050 Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:scia00230 scia01232 scia01100]
M00053 Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:scia00230 scia00240 scia01232 scia01100]

Pyrimidine metabolism
M00052 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:scia00240 scia01232 scia01240 scia01100]
M00938 Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:scia00240 scia01232 scia01100]

Amino acid metabolism
Serine and threonine metabolism
M00020 Serine biosynthesis, glycerate-3P => serine [PATH:scia00260 scia00680 scia01200 scia01230 scia01100]
M00018 Threonine biosynthesis, aspartate => homoserine => threonine [PATH:scia00260 scia01230 scia01100 scia01110]
M00621 Glycine cleavage system [PATH:scia00260 scia00630 scia00785 scia01200 scia01100]
M00555 Betaine biosynthesis, choline => betaine [PATH:scia00260 scia01100]
M00033 Ectoine biosynthesis, aspartate => ectoine [PATH:scia00260 scia01210 scia01230 scia01100 scia01120]

Cysteine and methionine metabolism
M00021 Cysteine biosynthesis, serine => cysteine [PATH:scia00270 scia00920 scia01200 scia01230 scia01100 scia01110]
M00017 Methionine biosynthesis, aspartate => homoserine => methionine [PATH:scia00270 scia01230 scia01100]

Branched-chain amino acid metabolism
M00019 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:scia00290 scia00770 scia01210 scia01230 scia01100 scia01110]
M00570 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:scia00290 scia01230 scia01100]
M00432 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:scia00290 scia01210 scia01230 scia01100 scia01110]

Lysine metabolism
M00525 Lysine biosynthesis, acetyl-DAP pathway, aspartate => lysine [PATH:scia00300 scia01230 scia01100]
M00527 Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine [PATH:scia00300 scia01230 scia01100 scia01110]

Arginine and proline metabolism
M00028 Ornithine biosynthesis, glutamate => ornithine [PATH:scia00220 scia01210 scia01230 scia01100]
M00844 Arginine biosynthesis, ornithine => arginine [PATH:scia00220 scia01230 scia01100]
M00015 Proline biosynthesis, glutamate => proline [PATH:scia00330 scia01230 scia01100]
M00970 Proline degradation, proline => glutamate [PATH:scia00330 scia01100]
M00972 Proline metabolism [PATH:scia00330 scia01100]

Polyamine biosynthesis
Histidine metabolism
M00026 Histidine biosynthesis, PRPP => histidine [PATH:scia00340 scia01230 scia01100 scia01110]

Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:scia00400 scia01230 scia01100 scia01110]

Other amino acid metabolism
Glycan metabolism
Glycan biosynthesis
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00899 Thiamine salvage pathway, HMP/HET => TMP [PATH:scia00730 scia01100]
M00916 Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:scia00750 scia01240 scia01100]
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH:scia00760 scia01240 scia01100]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:scia00770 scia01240 scia01100 scia01110]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH:scia00770 scia01240 scia01100]
M00883 Lipoic acid biosynthesis, animals and bacteria, octanoyl-ACP => dihydrolipoyl-H => dihydrolipoyl-E2 [PATH:scia00785 scia01240 scia01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:scia00790 scia01240 scia01100]
M00140 C1-unit interconversion, prokaryotes [PATH:scia00670 scia01240 scia01100]
M00846 Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:scia00860 scia01240 scia01100 scia01110]
M00926 Heme biosynthesis, bacteria, glutamyl-tRNA => coproporphyrin III => heme [PATH:scia00860 scia01240 scia01100]

Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
Plant terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Xenobiotics biodegradation
Aromatics degradation

Gene set
Pathogenicity
Drug resistance
M00627 beta-Lactam resistance, Bla system [PATH:scia01501]
M00714 Multidrug resistance, efflux pump QacA

Plant pathogenicity
Symbiosis
Module set
Metabolic capacity