KEGG   ORTHOLOGY: K18515
Entry
K18515            RNA       KO                                     

Name
csrB
Definition
small regulatory RNA CsrB
Pathway
ko02026  Biofilm formation - Escherichia coli
ko05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:ko00001]
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   05111 Biofilm formation - Vibrio cholerae
    K18515  csrB; small regulatory RNA CsrB
   02026 Biofilm formation - Escherichia coli
    K18515  csrB; small regulatory RNA CsrB
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis
    K18515  csrB; small regulatory RNA CsrB
  09184 RNA family
   03100 Non-coding RNAs
    K18515  csrB; small regulatory RNA CsrB
Messenger RNA biogenesis [BR:ko03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Bacterial Small RNA Regulators
     K18515  csrB; small regulatory RNA CsrB
Non-coding RNAs [BR:ko03100]
 Other RNA
  Unclassified
   K18515  csrB; small regulatory RNA CsrB
Genes
ECO: b4408(csrB)
ECJ: JWR0062(csrB)
ECD: ECDH10B_2961(csrB)
EBW: BWG_4243(csrB)
ECOK: ECMDS42_2297(csrB)
ECS: ECs5510(csrB)
ECF: ECH74115_4056
EOI: ECO111_ncRNA45(csrB)
EOJ: ECO26_ncRNA45(csrB)
EOH: ECO103_ncRNA46(csrB)
ECK: EC55989miscRNA65(csrB)
ECG: E2348C_ncR_45(csrB)
EOK: G2583_3445(csrB)
ECR: ECIAI1_miscRNA_59(csrB)
ECQ: ECED1_misc_RNA_58(csrB)
EUM: ECUMN_misc_RNA_51(csrB)
ECT: ECIAI39_miscRNA71(csrB)
ECZ: ECS88_misc_RNA_58(csrB)
EDJ: ECDH1ME8569_o0052(csrB)
ELW: ECW_nc3002(csrB)
ELF: LF82_s0379(csrB)
EFE: EFER_misc_RNA_7(csrB)
STY: STYs005(csrB)
STT: t4644(csrB)
STM: STM2966(csrB)
SEO: STM14_3575(csrB)
SEY: CsrB(CsrB)
SPT: SPA2830
SHB: SU5_nc122
SED: SeD_A3288
SFL: SF4558(csrB)
SFX: S3000(csrB)
ECLO: ENC_48580
ESA: ESA_00513
KPU: KP1_6106(csrB)
CKO: CKO_04148
EBF: D782_0922
YPA: YPA_r024
YPN: YPN_r091
YPM: YP_s5(csrB)
YPS: YPTB_RNA_90(csrB)
YEN: YEs032(csrB)
ECA: rsmB(rsmB)
PATO: GZ59_10600(rsmB)
DDD: Dda3937_04688(rsmB)
SOD: Sant_0888(csrB)
PAM: PANA_ncRNA18(csrB)
VFI: VF_2577(csrB2) VF_2593(csrB1)
VSA: VSAL_I3142s(csrB1) VSAL_I3216s(csrB3) VSAL_I3217s(csrB2)
SON: SO_m009(csrB2)
ASA: ASA_3990(csrB)
 » show all
Reference
  Authors
Suzuki K, Babitzke P, Kushner SR, Romeo T
  Title
Identification of a novel regulatory protein (CsrD) that targets the global regulatory RNAs CsrB and CsrC for degradation by RNase E.
  Journal
Genes Dev 20:2605-17 (2006)
DOI:10.1101/gad.1461606
  Sequence
[eco:b4408]
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