Paracidovorax avenae: Acav_2398
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Entry
Acav_2398 CDS
T01445
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aaa
Paracidovorax avenae
Pathway
aaa03030
DNA replication
aaa03410
Base excision repair
aaa03420
Nucleotide excision repair
aaa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Acav_2398
03410 Base excision repair
Acav_2398
03420 Nucleotide excision repair
Acav_2398
03430 Mismatch repair
Acav_2398
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aaa03032
]
Acav_2398
03400 DNA repair and recombination proteins [BR:
aaa03400
]
Acav_2398
Enzymes [BR:
aaa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Acav_2398
DNA replication proteins [BR:
aaa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Acav_2398
DNA repair and recombination proteins [BR:
aaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Acav_2398
NER (nucleotide excision repair)
GGR (global genome repair) factors
Acav_2398
MMR (mismatch excision repair)
DNA ligase
Acav_2398
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Acav_2398
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
TF_Zn_Ribbon
Motif
Other DBs
NCBI-ProteinID:
ADX46310
UniProt:
F0QD66
LinkDB
All DBs
Position
2690531..2692729
Genome browser
AA seq
732 aa
AA seq
DB search
MAEHPDLFSAPAQDDPEELGRRVAALRAQLHQWAHQYYVLDAPTVPDAEYDRVFQALQAL
EAAHPELVTPDSPTQRVIGAVMEGLTPVRHTVPMLSIRTETDTEASGAETFDARVRRELK
LAPDASPVEYVAEPKFDGLAMSLRYENGRLVQAATRGDGEVGEDVTHNIRTIRQIPLTLP
TGGDKGVPPVLEVRGEVYMRRADFDRLNERQREAGGKTFVNPRNAAAGAVRQLDSGIAAQ
RPLSFFAYGLGDITPAAEGGPDFATHFDMLQQLKAWGFPVAAQVRTALGAAELVAFHREV
GESRDQLPYDIDGVVYKVNSLALQRQLGFVTREPRWAVAHKYPAQEMVTRVEGIDVQVGR
TGKLTPVARLAPVFVGGVTVTNATLHNLFEIRKKGVRVGDQVIVRRAGDVIPEVVGTVPA
ALLPVAGALQGSDALVDAASGADGTAPGADAARAAPRSPYVPNFRMPRQCPICGSAVVRE
KGEANHRCTGGLFCPAQRKEALLHFAQRRAMDIEGLGEKLVDQLVEGQVIRTLPDLYRLG
LTALSSLDRMAEKSAQNVLAALEKSKHTTLPRFLFGLGIRHVGEATAKDLARHFGGLDAI
IGASVEQLLEVNDVGPIVAEAIHTFFAQPHNREVVEQLRACGVTWKEGPPAERATLPLAG
KTFVLTGTLPTLSREDAKERLEAAGAKVAGSVSKKTHYVVAGEEAGSKLTKAQELGVPVL
DEAGMLALLQGD
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggccgaacatcccgacctgttttccgctcctgcccaggacgaccccgaggagctgggc
cgccgcgtcgccgcgctgcgggcgcagttgcaccaatgggcgcaccagtactatgtgctg
gatgcacccaccgtgccggatgccgaatacgaccgtgtcttccaggccctgcaggcactg
gaggcggctcatcccgaactcgtcacgcccgattcgcccacgcagcgcgtgatcggagcg
gtgatggagggcctgacgcccgttcgccatacggtaccgatgctcagcatccgcaccgag
accgacaccgaggccagcggcgccgagacgttcgatgcccgcgtgcgccgggagctcaag
ctcgcgcccgatgcgtcgccggtcgaatacgttgcagaacccaaattcgacggcctggcc
atgagcctgcgctatgagaacggtcgcctggtacaggccgccacacgcggcgatggcgaa
gtgggcgaggacgtgacccataacatccgcaccatccgccagatcccgctcacgctgccc
acgggcggcgacaagggcgtgccgccggtgctggaggtgcggggcgaagtctatatgcgc
cgtgcggatttcgacaggctcaacgagcgccagcgcgaggccggcggcaagaccttcgtc
aatccgcgcaacgcggcggccggcgcggtgcgccagctcgactcgggcattgccgcgcag
cggcccctgagcttcttcgcctatggcctgggcgacatcactccggcggcagagggcgga
cccgacttcgccacccacttcgacatgctccagcaactcaaggcctgggggttcccggtc
gctgcgcaggtgcggaccgcgctgggtgcggccgagctggtcgctttccaccgggaggtg
ggcgagagccgcgaccagttgccctacgacatcgatggcgtggtgtacaaggtcaacagc
ctggctctgcagaggcaactcggtttcgtgacccgcgagccgcgttgggccgtggcgcac
aagtatccggcgcaggagatggttacccgcgtggaggggatcgacgtgcaggtcggccgt
accggcaagctcacccccgtggcgcggctggctcccgtcttcgtgggcggcgtcaccgtc
accaacgccacgctgcacaacctgttcgagatccgcaagaaaggcgtgcgggtcggtgac
caggtcatcgtgcgccgcgcgggcgacgtgattcccgaagtggtgggcacggtgccggcg
gccctgctgcccgtggcgggcgcgctgcagggctccgatgccctggtggacgccgcttcc
ggggcggatggcacggcccccggggccgatgctgcgcgtgccgcgccgcggtcgccctac
gtgcccaacttccgcatgccgcgccagtgccccatctgcggcagcgcggtggtccgggag
aaaggcgaagccaaccaccgctgcaccggggggcttttctgcccggcccagcgcaaggag
gcgctgctccacttcgcccagcgccgggccatggacatcgaaggcctgggcgagaagctg
gtggaccagctggtggaaggccaggtcatccgtaccctgccggacctgtaccggctgggc
ctgacggcgctcagcagcctggaccgcatggcggagaaatccgcgcagaacgtgctggcg
gccctggagaagtccaagcacaccacactgccgcgcttcctgttcggcctgggcatccgc
catgtgggcgaagccacggccaaggacctggcgcgccatttcggcggcctggacgccatc
atcggcgccagcgtggaacaactgctcgaggtgaacgacgtcggccccatcgtcgcggag
gccatccataccttcttcgcgcagcctcacaaccgcgaggtggtggagcagctgcgcgcc
tgcggcgtcacctggaaggaaggcccgccagccgaacgcgccaccttgccgctggctgga
aagacctttgtcctcaccggcacgttgccgaccctgagccgtgaagatgccaaggagcgg
ctcgaagccgcgggcgccaaggtcgcaggttcggtcagcaagaagacgcactatgtcgtg
gccggggaagaggccggcagcaagctcaccaaggcgcaggagctgggtgtgcctgtcctg
gacgaggcgggcatgcttgccctgctacagggcgattga
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