Anaplasma marginale St. Maries: AM152
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Entry
AM152 CDS
T00216
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ama
Anaplasma marginale St. Maries
Pathway
ama03030
DNA replication
ama03410
Base excision repair
ama03420
Nucleotide excision repair
ama03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ama00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AM152 (ligA)
03410 Base excision repair
AM152 (ligA)
03420 Nucleotide excision repair
AM152 (ligA)
03430 Mismatch repair
AM152 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ama03032
]
AM152 (ligA)
03400 DNA repair and recombination proteins [BR:
ama03400
]
AM152 (ligA)
Enzymes [BR:
ama01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AM152 (ligA)
DNA replication proteins [BR:
ama03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AM152 (ligA)
DNA repair and recombination proteins [BR:
ama03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AM152 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AM152 (ligA)
MMR (mismatch excision repair)
DNA ligase
AM152 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AM152 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
DNA_ligase_ZBD
HHH_2
PTCB-BRCT
RNA_lig_T4_1
zf-NADH-PPase
RNA_ligase
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AAV86291
UniProt:
Q5PBN8
LinkDB
All DBs
Position
complement(130162..132183)
Genome browser
AA seq
673 aa
AA seq
DB search
MLEQARRRLAGLNAKLRHHDVLYHGLDAPEVTDHQYDLLVQEKKRLLDEFPDISQYDDYA
DVVGTPKIDSRFPKVQHLEPMLSLENAFTVQDVEKFITRVRRFLELQPDDILELSCELKM
DGMSFSALYHGGKLTRVATRGNGHFGEDITTNAMVLRGLPHQLDSAPEVLEVRGEIYMHH
EDFEKLRGSCNFANPRNAAAGSIRQLNQKIVEERNLSYVAYSAVNSTFATQQEILKQLDE
WGFHTNKQVLFTDKIEEAIAFYNSVYTTRSALGYDIDGVVYKVNSTNFQKLLGATGKSPR
WAIAHKFPSTEARTKLLDITVQVGRTGVVTPIAELEPINIGGVMVSRASLHNLNEIERKD
VRIGDLVIVKRAGEVIPQVVDVDKTLRSSGTQKFVFPSHCPSCGSKLHREPGEVALRCVA
ELSCKAQALERVKHFVSRDGLNIMGLGAKQIEFFCNHGLIGSIADIFSLEEKLHGINLDT
EHGWGEKSVANLIAAIRNSATVRLSNFIFALGIRFIGVGAAKLVAEHYRSYKNWHQAMLA
LTETHDTVQIRGLGEKSISSLKAFFSVQGNLEVLESLSAKLNILDEASPAQRGSSAISGK
TVVFTGTLESMSRTEAKLQAESLGAKVANSVSANTWLLVAGSNPGSKHEKALSLNVRVID
EQTWVKMVEDARS
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgttggagcaggctaggcgcaggttggctggtctgaatgcgaagctccgccaccacgat
gtgttataccacgggcttgatgcgccagaggtgacggaccaccaatatgaccttctagtg
caagagaaaaaaaggctcttggacgagttcccagacattagtcagtatgatgactacgca
gacgttgtgggcacgcctaaaattgactccaggttccccaaagtgcagcatttggagccc
atgctctctctggaaaacgcttttaccgtacaggatgtggaaaaatttatcaccagggta
aggcggtttcttgagctgcagccagatgacattttagagctttcctgcgagttaaaaatg
gatggcatgtcattctctgcgctataccatggtggaaagcttaccagagtggcaacgcgc
ggcaatgggcacttcggcgaggatatcaccaccaacgcgatggtcctgcgcgggctgcca
catcagctagattcggccccagaagtgcttgaagtgcgcggtgaaatatacatgcaccat
gaagactttgaaaagctacgagggtcctgcaattttgcaaatccacgtaacgcagccgcg
gggtcaatacgccagctcaaccagaagattgttgaggagcgcaaccttagttacgtggct
tattccgcggtaaacagcacatttgcaacccagcaggaaatactaaagcagctggatgaa
tgggggtttcatacaaacaagcaagtgcttttcacggacaaaatagaagaggcgattgca
ttttataactcggtctacacaaccagaagtgcgcttggttatgacatagacggagtcgtg
tacaaggtaaacagcaccaacttccagaagcttctcggtgcaaccggcaaatcaccccgt
tgggcaattgcgcacaaattcccctctactgaggctcgcacaaaacttcttgatatcacc
gtacaagtaggcagaaccggcgttgtaactccaatagcggagctggagccaatcaacata
ggaggcgttatggtttccagggcaagtctgcacaacctcaatgaaatcgaacgcaaagat
gtgcgcataggagacttggttatagtaaagcgggcaggagaagttataccacaggtggtt
gacgtagataaaaccctccgcagtagcgggacgcagaaatttgtctttccctcgcactgc
ccgtcatgcggtagcaagctgcaccgcgagcccggtgaagtcgctctgcggtgtgtggca
gagttgtcatgcaaagcacaggctctagagcgcgttaagcacttcgtatccagagatggc
ttaaacattatgggcctgggggcaaagcagatagagttcttctgcaaccatgggctgatt
ggcagcatagccgatattttttcccttgaggaaaagctacatggcattaacctggataca
gaacatgggtggggggaaaagtcagtcgcaaatctcatcgccgcaatacgcaacagcgca
acagtcaggctcagcaacttcatatttgccctgggaatacggtttataggcgtgggcgcg
gcaaaacttgttgctgaacattacagatcttacaaaaactggcaccaagcgatgttggcg
ctcaccgaaacacatgatactgtacaaattcgcggcttgggagaaaaaagcataagttct
ttgaaggcatttttctccgtgcaggggaatctggaagtattagagtcgctgagcgcaaag
ctcaacattttggacgaggcatctccggcacaacgcggcagctctgccatttccggcaaa
accgtggtgtttaccggcactttggagagcatgtcaagaacggaagcgaagctgcaggcg
gaaagcctaggggctaaagtggcgaattccgtatccgcaaacacctggttactggttgca
ggtagcaatccaggaagtaagcacgaaaaagcactaagcctgaacgtcagggtaatagac
gagcagacttgggtgaagatggtagaggatgcgcgctcctga
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