Astyanax mexicanus (Mexican tetra): 103044552
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Entry
103044552 CDS
T05042
Name
(RefSeq) collagen alpha-1(XXVII) chain A-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
103044552
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
amex00536
]
103044552
Glycosaminoglycan binding proteins [BR:
amex00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103044552
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
103044552
NCBI-ProteinID:
XP_022531641
LinkDB
All DBs
Position
14:26679073..26771673
Genome browser
AA seq
1818 aa
AA seq
DB search
MNLATPRRARGTSHEWATRALLLCTLLSCTCYLGLTQVLSEDVDVLQRLSLRVEQGSRTI
PFGVISLRSGVILTPRARVTTATRSVLPPDAAWNATLVLSVRSHRVNSAFLFSVFSGTRI
QLGLEISPGTLTLYSGLQNSVSFPYDLHDGRWHNLAIVLAGQTVTLLPACNHSDSRGASK
ELLLPPPARLDPRGTFRLGGSSALLPGVAPFEGAICQFDIVPTARAQANYCNAIRRQCRE
NDTYRPAPPPVLLPLQHHHTSSTSAPNLPSNRTFTTVPTSIPRTALNSAIGPVVGSRLNT
PSVTPTPLIPTGTGLEPPPSRKRLITATTLSPLKTPKPSAKNSLKPTASKPTAFKPAATD
KSKSVGFKFTTARTQMKPVTAKPYSAKKLTNIKPTVSKPINTKPTVLKPTISAKPNNPKP
TTASKPTNPKPSATKPAPSKPSKPTTTKPKTVKPTVQKAPLLKPSPPLPKPTLENTTKKP
PMKPQHITAPTVTSSTKKQADKTMSLTDQRSNAPKKPTSSPAKKTQKPKTNTQRLPRHTA
PTPRPTQFTTLVPRTPQNTLPTPKTLQRTPRPPVTPPTVTLETLTVLPADGFQGWNLDPT
MYAYLIGPPGQKGEPGPLGIRGPPGKPGLPGKQGPQGPPGPHGKPGPPGPPGFKGQKGDP
GISPGKAPKGEKGDPGILGPVGLSGLEGRKGLKGHPGPPGLPGEPGEQGPEGSSGAKGYP
GRQGLPGPIGPPGPKGVRGFIGIPGLFGLPGPDGERGSPGPPGKRGTMGTPGFPGDFGER
GPPGADGEPGVLGASGPPGVLGLIGDMGPAGPVGLPGLDGLKGVAGNMGEPGLKGDKGDV
GLSGDQGEPGFQGDKGVQGLPGLPGPRGKPGLQGRIGERGPDGVPGPPGPEGFPGDIGPP
GQNGPEGPKGKIGARGLPGPRGASGLEGEEGPVGPPGPAGLEGEQGVTGKAGPMGERGLV
GFVGPVGEPGLAGEKGDRGTMGLPGPPGEKGSEGHPGTPGESGLPGPPGPPGPAGSRGPT
GTRGPKGRRGPRGLDGPVGEAGTEGKKGLDGPPGKIGFPGDQGKIGEPGEVGPKGFPGIQ
GPSGAPGAKGIAGEPGPPGILGAVGALGNIGPKGPPGKVGDPGVLGEPGEKGAAGAEGNA
GAPGIIGPRGEPGLEGEAGPAGPDGTKGEKGDMGQEGEPGMRGESGIKGKEGPPGDPGLT
GVRGPEGKPGKIGERGKPGLKGAKGNMGHLGETGTVGKLGPIGATGPKGSRGTIGPVGAP
GRMGQQGETGIAGYEGHQGPTGPLGPPGPKGEKGEHGDDGKIEGPPGPPGLRGRVGDPGD
RGESGDPGYPGQQGVDGFRGKPGAPGLPGHPGPRGQQGPKGSKGEQGQKGKQGKQGERGT
RGTTGTVGLPGPRGVVGREGQEGVPGADGIPGKDGTKGILGDQGDDGAIGLSGKPGARGK
VGVPGLRGDQGSFGPKGERGLPGHPGPSGKRGFKGVTGLPGSQGDRGPKGQPGDVGEPGF
PGILGMFGPKGPSGDFGIKGIRGPKGPPGSIGKGGVPGPVGIIGPAGSPGPRGDSGSRGE
MGAQGPRGAPGPRGPPGPPGPPSIPLSFQRDDSGVPLPSFAGSHSALKPQGVAVLDLPML
DKAPEILRTLHYLSLLVHSLKNPLGTRDHPARLCRDLHTCQYKLNDGTYWIDPNMGCSSD
SIEVSCNFTGGGLTCLRPITVSKLEFSVGLIQMSFLHLLSSRAEQRITIHCLNVSIWSFG
QSQSSSPNAVKFRGWNGETLEPDVLEDTCWQRDGQWQRAVFLFRVNDASFLPVKHINNLP
ETALSSRYHLEVGPVCFL
NT seq
5457 nt
NT seq
+upstream
nt +downstream
nt
atgaatttagcgacccccaggagagcgcgcgggacctctcacgagtgggcaacgagagct
ctgcttctgtgtactcttctgagctgtacttgttatctaggactcacacaagtactgtct
gaagatgtggatgtcctgcagcgtctgtctctgcgtgttgagcaggggtcccgcaccatc
ccttttggagtcatctccctccgctccggtgttatcctcacgccccgtgcgagggtcacc
acagcaacacgctccgtgctcccaccggatgcagcctggaatgccacgcttgtgctgagt
gtccgctctcaccgtgtcaactctgcttttcttttctctgttttttctggcacccggatc
cagctgggcctggagatttcccccgggacattgactctttactcaggactccaaaactct
gtcagcttcccctatgacctccatgacggccgttggcacaacctggccatcgtcctggct
ggccagacggtcaccttgctgcctgcatgtaaccacagcgacagcaggggtgcatccaag
gaactactgttgccccctccagcccgtttggaccctcgcgggacatttcggctaggtggc
agcagcgccctgttaccgggcgttgccccgtttgaaggggccatatgccagtttgacatt
gtgcccacggcacgggcacaagcaaactactgcaatgccatccgcaggcagtgcagagaa
aatgacacttacaggcccgccccgccccctgttttactgccactccaacatcatcatact
tcatccacctcggccccaaatttgccttctaatcgtaccttcacaactgtgcccactagt
ataccacggacagctctaaatagtgccattgggccggttgttgggtcccggctgaacacc
ccatctgtcactcccacacctctaatcccgactgggacgggacttgaaccaccaccatct
cgaaaacgcttaatcactgcaaccacattgtcccctctcaaaacgcccaaaccctcggcc
aaaaacagccttaaacccacagcttccaaacccacagctttcaaaccagcagccactgat
aaatctaaatcagtggggttcaaattcaccacagcaagaactcaaatgaaacctgtcact
gccaaaccttacagtgcaaaaaaactcactaatataaaacccactgtctcaaaacccatc
aacacaaaacccactgtcctcaaacctaccatctccgcaaaacccaacaatcccaaaccc
actactgcatcaaagcccacaaacccaaaacctagtgccaccaagccagcaccatcgaag
ccctctaaacccacaaccaccaaacccaagacagtcaaacccacagtgcagaaagcccct
cttctcaagccatctcctcctcttcctaaacccactctggaaaataccaccaaaaaacct
ccaatgaagccccaacacatcacagctcccactgtaaccagctccactaagaaacaagca
gacaagacaatgtctttgactgaccagcgttcaaatgctccaaagaaacctaccagcagt
ccagctaaaaaaacacagaagcccaaaaccaacactcagcgattacctagacacactgct
cccacacccagaccaacacagttcaccacccttgttccaaggacaccccaaaacaccctg
ccaactcctaaaaccctccaaaggaccccacgacctcctgttacaccaccaacagtaacc
ctggagacgctgacggttctgcccgctgatggttttcagggttggaatctggatccaacg
atgtatgcatatttaattggaccaccgggccaaaagggagagccaggacctttgggaatt
cggggacctccaggaaaaccaggactgccagggaagcaagggcctcaaggaccacccgga
ccacatggtaaaccaggaccaccaggtcccccagggtttaaggggcagaagggtgaccct
ggaatatctcccggaaaagctcctaaaggagagaaaggagatcctggaatcctgggtcct
gttggtttatctggtttggaagggcgaaagggactgaaaggtcatcctggaccacctggc
ctcccaggagaaccaggtgaacaagggcctgagggaagttctggtgccaaaggctatcct
ggcaggcaggggcttcccggacctataggtcctcctgggccaaaaggtgtgcggggcttt
attgggatcccaggcctgtttggtttacctggacctgatggtgaaagaggcagtcctggt
cctccagggaagaggggcacgatgggtacgccgggttttccgggagattttggagagagg
ggtccaccgggagctgacggggagccaggtgttcttggtgcctccggcccccctggagtt
ctcggcctcatcggtgacatgggcccagctggaccagttggtttaccaggattggacgga
ctgaagggagttgccgggaatatgggcgagcctggactgaaaggtgataagggtgatgtt
gggctttctggagatcaaggagaaccaggcttccaaggagacaaaggtgtccagggttta
ccagggttgccaggtccacgaggaaaaccaggacttcagggtagaataggagagagggga
cctgacggggtgcctggtccaccgggtccggaaggttttcctggtgacatcggaccacct
ggacaaaacggccctgaaggaccaaagggcaaaatcggagcaagagggttaccgggacct
cgtggggcttcaggactagagggagaggagggacctgttggaccacctgggccggcggga
cttgagggcgagcaaggagtcaccggaaaggctgggccaatgggagagagaggtttagtt
ggtttcgttggtccagtgggggagcctggattggcaggggaaaagggtgatcgagggaca
atgggtttgccaggaccaccaggagagaaaggatctgagggacatccaggtactccagga
gaaagcggccttcccggcccaccaggtcctccgggccccgcaggatcacgtggccccacc
ggcactcgaggacccaaagggaggcggggtccacgggggctggatggcccagttggcgag
gctggcacggaggggaaaaagggtctcgatggtcctcctggaaaaattggcttccctgga
gaccagggtaaaattggagagcctggagaggtgggaccaaaaggatttccaggaatccag
gggccttctggggctccaggagccaaaggaatcgcaggagaaccaggtcccccaggaata
ctaggagcagtaggggctctcggaaacattggaccaaaggggcctccaggaaaagtggga
gaccccggagttttgggtgaaccaggagaaaagggtgcggcgggagctgaaggaaatgct
ggagctccaggaatcattggaccaaggggagagccgggtttggagggggaggctggtcct
gctggtcctgatggcactaagggggagaaaggggacatggggcaggaaggcgaacccggc
atgagaggtgaatccggaatcaaaggcaaagagggaccaccaggcgaccccggacttact
ggtgtcagaggtcctgaaggaaagccagggaaaataggagaaagaggaaagcctggcctg
aagggagcaaagggcaacatgggacacctgggagagactggaactgtggggaaactggga
ccaattggagccactgggcccaaggggtcgagaggaaccatcggacctgtgggagctcct
ggacggatgggtcagcagggggaaaccggcatagcagggtatgagggtcaccaggggcca
acaggtccattggggcctccaggaccaaaaggtgaaaagggtgaacacggggatgatggg
aagattgagggtcctcctggcccccctggactcagaggtagagttggagatccaggagac
cgaggggagtcaggtgatccaggatatccaggtcagcagggggtggacggatttagaggc
aaacctggagcacctggattacctggtcatcctggtcctcgtggacaacaaggacccaaa
ggatcaaaaggcgagcagggtcagaagggaaaacagggtaaacaaggagaacgtggaact
agaggaacaacgggtactgttggattgcctggtccaagaggtgtggttggtcgggaaggg
caggagggcgttccaggagctgacggtattccgggaaaagatgggactaaaggaattctg
ggtgatcaaggagatgatggtgccatcggtctctccggtaagcctggagctcgggggaaa
gtgggtgttccggggttacgaggagatcagggttcatttggtccaaagggtgagcgaggt
ctcccaggtcaccccggcccttcaggaaagagaggcttcaaaggagtgacgggccttcca
ggatctcagggggaccggggacccaaaggacagccaggggatgttggagaacctgggttt
ccagggatactcggaatgtttggaccaaaggggccttcaggtgactttgggatcaaaggt
attcggggacctaaaggacctcctggttcaatagggaaaggtggagttcctggtccagtt
ggtataattggcccagctggcagcccgggtcctagaggagatagtggtagcagaggagaa
atgggtgcccaggggccaagaggtgctcctggacctcgtggacctcccggaccaccgggg
cctcccagcatcccactgtcctttcaacgggacgatagtggagtacctttgccttcgttt
gctggatcacactctgcgctcaaacctcagggtgtggcagtgctggatctgccaatgctg
gacaaggctccagagattctgcggacgctgcactacctgagtttgttggtgcacagcctg
aagaatcctctgggcacacgggaccacccagctcgcctctgccgggacctgcacacctgc
caatacaaactcaacgatggcacttactggattgaccccaacatgggttgctcctctgac
tctatagaagtttcctgcaacttcacaggaggtggacttacctgcctcaggccaatcaca
gtgtccaagctggagttcagcgttggactgatccaaatgagcttcctgcatttactgagc
tcaagggcagagcaacgcatcaccatccactgccttaatgtctccatctggagctttggc
cagtctcagtcctcttctccgaatgctgtgaagttcagagggtggaatggagagacgctg
gagccagacgtgttggaggacacctgctggcagcgggacggacaatggcagcgtgccgtc
ttccttttcagagtgaacgacgcctctttccttcctgtaaaacacatcaacaatcttcct
gaaaccgcactctcgtcacgctaccatctcgaggttggacctgtgtgtttcctttag
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