Acetobacter pasteurianus IFO 3283-12: APA12_19090
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Entry
APA12_19090 CDS
T01814
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
apg
Acetobacter pasteurianus IFO 3283-12
Pathway
apg03030
DNA replication
apg03410
Base excision repair
apg03420
Nucleotide excision repair
apg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
apg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
APA12_19090
03410 Base excision repair
APA12_19090
03420 Nucleotide excision repair
APA12_19090
03430 Mismatch repair
APA12_19090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
apg03032
]
APA12_19090
03400 DNA repair and recombination proteins [BR:
apg03400
]
APA12_19090
Enzymes [BR:
apg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
APA12_19090
DNA replication proteins [BR:
apg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
APA12_19090
DNA repair and recombination proteins [BR:
apg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
APA12_19090
NER (nucleotide excision repair)
GGR (global genome repair) factors
APA12_19090
MMR (mismatch excision repair)
DNA ligase
APA12_19090
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
APA12_19090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
DNA_ligase_ZBD
HHH_2
PTCB-BRCT
HHH_5
RUBY_RBDX
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
BAI21306
LinkDB
All DBs
Position
2077915..2079972
Genome browser
AA seq
685 aa
AA seq
DB search
MTQQQAREELERLAAEIAHHNAAYYRNDAPEISDAEYDALRRRYDAIVAQHPEAEPENSA
AQAVGAAPDTAFGKHIHLVPMLSLDNVFDREDFEGFISRATRFLGLDQDATEQLIFVGEP
KIDGLSISLTYEKGRFVRGTTRGDGTEGEDVTANLRTLKDLPLRLSGSYPDLIEIRGEVF
LSKKHFLELNAAQEAANKRLFANPRNAAAGSLRQLDPKITAQRPLSLFAYALGFCSEKIS
RSHWAYLEQLKAWGFPVNPLSRQIKGVEDAEAFFAEVSQSRAELAYDIDGVVYKIDDLAL
QERLGFAGRAPRWAIAWKFPAEQAITRLKEIEIQVGRTGALTPVAHLEPVNVGGVLVMRA
TLHNEDEIARKDVRPGDMVFIQRAGDVIPQVLGVAPSPDGTPRQAPYHFPDHCPVCGAAA
VRPEGEAVRRCTGGLTCPAQVVERLIHFVSRQAFDIEGLGDRSIREFHDIGLILTPGDIF
RLHEHAADIEKRDGWGEQSVQKLLQAIESRRTISLSRFIYALGIRRIGASNARLLARHYG
TYENWFSQMQAAAIIGSDARLELGSITGIGTTTAEDLVAFVAEEHNLQTLADLHANLTIT
EETAASEGALAGKTIVFTGTLHTMTRPEAKATAERMGAKVSDSVSKKTDLVVLGEKAGSK
AKKAVELGLQTMDEAEWNAFCSEQE
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgacacaacaacaagcgcgggaagaactggaacgccttgccgccgaaattgcccaccac
aatgcggcctattatcggaacgatgctccagaaatcagtgatgcagaatatgatgccctg
cgccggcggtatgatgccattgtggcccagcacccagaggccgaaccggaaaacagcgca
gcccaagccgtaggtgccgcaccggatacagcctttggcaagcacatccaccttgtgccc
atgctctctctggacaacgtgtttgaccgggaagattttgaaggatttatcagccgcgcc
acccgctttttggggctggaccaggatgcaaccgaacaactgatttttgtaggtgaaccc
aagattgatggactttccatcagcctgacctacgaaaaaggccgttttgtacgtggcacc
acccgcggagatggcacagaaggggaagacgttaccgccaatttgcgcacgcttaaggat
ttgccgctacgcctttccggctcctaccctgatctgatcgaaattcgtggtgaggttttc
ctttccaaaaaacattttctggaactcaacgccgcgcaggaagcagcaaacaagcggttg
tttgccaacccacgcaacgcagcagcagggtccctgcggcagttagaccccaaaattaca
gcgcaacgcccgctttctttgtttgcttacgcgcttggcttttgctcagaaaaaatcagc
cgcagccattgggcatatctggaacaactcaaagcatggggtttcccggttaatccgctt
tcccgccagattaaaggcgtggaagatgccgaggctttttttgctgaggtcagccaaagc
agggctgaacttgcctacgatattgatggcgttgtttacaaaattgatgatctggccctg
caggaacgcttgggttttgctggacgtgcgccccgctgggccattgcgtggaaatttccg
gcagaacaggcaattacacgcctgaaggaaatagaaattcaggttggccgcacaggtgct
ctcaccccagttgcgcatttagaacccgtaaatgttggcggtgtgctggttatgcgcgca
accttgcataacgaagatgaaattgcccgcaaggatgtccgccccggtgatatggttttc
atccagcgtgcgggggatgttatcccccaagttttgggtgttgccccttccccagatggc
acgccccggcaggcaccttaccacttccctgatcattgccctgtttgtggggccgctgct
gtacggccagaaggggaagctgtgcgccgttgcacgggtgggctcacctgtccagctcag
gttgtagaacggcttatccactttgtttcccgccaagcgtttgacattgaaggcttggga
gaccgcagcattcgtgaattccatgatattggcctgattttaacacccggcgacattttc
cgtctgcatgaacacgccgcagacatagaaaagcgcgatggatggggcgaacaatcggtt
caaaaactgctgcaagctatagagagccgccgcaccatttctctttctcgctttatttat
gcgctgggtatccgccggattggcgccagcaatgcccgcctgctggcgcgccactatggc
acgtatgaaaactggttcagccagatgcaggctgccgccattatcggatctgatgcccgg
ctggaactcggctccattaccggcataggcaccaccacggcggaagatctggttgccttt
gttgcagaagaacataacctgcaaacattggcggatttgcacgcaaacttaaccataacg
gaagaaactgcggcatccgaaggcgcattggctggcaaaaccattgtgtttaccggcacc
ctacacaccatgacacggccagaagccaaagcaacggcagaacgcatgggcgccaaggtt
tcggattctgtgtccaaaaaaacagatctggttgttctgggagaaaaagctggctcaaaa
gccaaaaaggccgttgagcttggacttcagaccatggatgaggctgaatggaacgctttt
tgctccgagcaggaataa
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