Acipenser ruthenus (sterlet): 117418458
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Entry
117418458 CDS
T07327
Name
(RefSeq) LOW QUALITY PROTEIN: slit homolog 1 protein-like
KO
K06838
slit 1
Organism
arut
Acipenser ruthenus (sterlet)
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
arut00536
]
117418458
Glycosaminoglycan binding proteins [BR:
arut00536
]
Heparan sulfate / Heparin
Axon guidance molecules
117418458
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
Laminin_G_2
Laminin_G_1
hEGF
LRRNT
LRRCT
LRR_1
LRR_9
DL-JAG_EGF-like
JAG1-like_EGF2
EGF_3
cEGF
C8A_B_C6_EGF-like
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
117418458
NCBI-ProteinID:
XP_033887430
LinkDB
All DBs
Position
13:8067202..8145232
Genome browser
AA seq
1542 aa
AA seq
DB search
MSLGRSSSTATGTTLAKAGLWVVLLGTLFGSNASACPALCTCSGTTVDCHGLGIKAVPRN
IPRNTERLELNGNNITRINKNDFSGLKYLRVLQLMENQIGVIERGAFDDMKELERLRLNR
NQLHMFPELLFQKNAALSRLDLSENFIQAIPRKGFRGATDIKNLQLDKNQITCIEDGAFR
AMRGLEVLTLNNNNISSIPVSSFNHMPKLRTFRLHSNSLHCDCHLSWLSQWLRQRPTIGL
FTQCSGPTQLRGLNVAEVQKHEFACPAHAQSPHSQPCSLLAGSCPAMCTCSNNIVDCRGK
GLTAIPANLPDSMAEIRLEQNGIKSVPPGAFSPYKKLRRIDLSNNHISEIAPDAFQGLRS
LNSLVLYGNKITDLPKGVFDGLYALQLLLLNANKIHCVRADAFQDLQNLSLLSLYDNKIQ
TLAKGTFAALRAVQTLHLAQNPFICDCNLKWLADYLRSNPIETSGARCASPRRLANKRIG
QIKSKKFRCSAKEQYFIPGLHHNNCTEDTRLNNECNSDTVCPPKCRCEANVVDCSNLRLT
KIPEHIPQSTAELRLNNNEIAALEATGIFKTLSQLKKINLSNNKITEIEDGAFEGAIAVN
ELHLTANQMDSVRSGMFRGLEGLRTLMLRNNRLSCVHNSSFTGLRNVRLLSLYDNQLTTI
TPGAFDTLQSLSTLNLLANPFNCDCRLAWLGDWLRTRKIVTGNPRCQRPAFLKEIPLQDV
AFLDFRCEEGQEEASCVPRPQCPSECTCLETVVRCSNKHLRALPRGIPRNVTELYLDGNQ
FSIVPKELSSFKYLQLVDLSNNKISSLTNSSFTNMSQLTTLILSYNSLRCIPVLAFRGLR
SLRLLSLHGNEVSELLEGIFSDVASLSHLAIGANPLYCDCRLRWLSDWVKTGYKEPGIAR
CTGPAGMEGKLLLTTPAKKFECQGPIDPAVLAKCSPCTSNPCHNQGTCQSDPVEVYKCTC
SPGFKGKDCETALNACISNPCANEGTCQPSPGESGGYTCTCPQGFKGPACEVNLDDCEDN
DCETGATCVDGVNNYTCLCPPYHTGDLCEELEDVCSPGRNPCQQGSKCVVTASGPKCECA
PGFVGDDCSVSYDDCVHHRCQNMARCIDELNGYTCLCAEGYSGQLCEFPSRSLIPSSPCE
LVECQNSAPCVERGGRALCQCLPGFGGPRCEKLVSVNFVDRDSYLQLSDLKNWPHANITL
QVSTAEDNGILLYNGDNDHIAVELYQGHVRVSYDPGSQPSHAIYSTETINDGQFHTVELV
TFDQMVNLSIDGGAPMTMDSFGKLHPLNGEAPLYVGGMPVDVNAAAFRLWQIQNGSSFHG
CIQNLYINNELQDFTKTQMKPGVVPGCEPCRKIYCLHGICQPDGATGPVCHCQPGWSGVH
CDQPASNPCQGNKCVHGTCVPLDMLSYRCECKEGYRGALCNQQVELFNPCNKLQCKHGDC
QISDAGEAYCHCDSGYSGDLCDTESECRGEAVRDYYQVQRGYAICQTTRMVAWVECSGAC
ETGACCSSQRMKRRKYTFECSDGTSFTEEVEKTIKCGCTGCM
NT seq
4629 nt
NT seq
+upstream
nt +downstream
nt
atgtctcttggaagaagcagcagcactgcgactggcacaacgttggcaaaagctggactc
tgggttgtgttgttgggaaccctgtttggaagcaatgccagtgcctgcccagcactctgc
acttgcagtggcaccactgtggattgccacggactagggatcaaagccgtgcccaggaat
attccaaggaacactgagaggctggagctgaatggaaacaacatcacacgcatcaacaaa
aatgacttttctggactgaaatacctcagagtattacagctgatggaaaaccagattgga
gtgatcgagcgcggagcatttgatgacatgaaggagctagagaggctgcgcctgaatcgg
aatcagctccacatgttcccagagctgctgttccagaagaacgcggctctctcccgactt
gacctgagcgagaactttatccaggccatccccaggaaggggttccgaggagccactgat
atcaagaacctgcagctggacaaaaaccagatcacctgcattgaggatggagccttccgg
gcgatgagagggctggaggtcctgaccctgaacaacaataacatcagcagcattcccgtc
tccagcttcaaccacatgcccaagctccgaaccttccgcctacactccaacagcctacac
tgtgactgccacctgtcctggctttctcagtggctgaggcagagacccaccattgggctg
tttacccaatgtagcggcccgacacaactgcgtggtctcaatgtggccgaggtccagaaa
cacgagtttgcctgcccagcacatgcgcagtctccacattcacagccctgtagcctgctg
gccggatcctgtccagccatgtgcacctgcagcaacaacattgtggactgcagaggaaag
gggctgactgctatcccagccaacctgcccgacagcatggccgaaatacgtctggaacag
aatgggattaagtcagtcccaccaggagccttttccccctacaagaagctgcgcagaata
gacctgagtaacaaccacatctctgagattgcacccgatgccttccaaggactgcgctct
ctcaactcactggtcctttatggaaataaaatcacagacctacccaaaggtgtttttgat
ggactgtatgccttgcagctattgctgctgaacgctaataagatacactgtgtccgtgct
gatgccttccaggacctgcagaacctatccctgctctcgctctacgacaacaagatccag
actctggccaaggggaccttcgccgcactgcgcgctgtgcagactctacacctggcgcag
aacccatttatctgtgactgtaatctgaagtggctggcagactacctgcgctccaacccc
atcgagacgagcggagcgcgctgcgccagcccccggcgcctcgccaacaagcgcatcggc
cagatcaagagcaagaagttccgctgctctgctaaagaacagtacttcatcccaggactg
caccacaataactgcactgaggacacacggctcaacaatgagtgtaacagtgacacagtg
tgtccaccaaagtgccgctgtgaagccaacgtggtggactgctccaacctccgcctcacc
aagatccctgagcacatcccacaatccactgctgagctacgtctgaacaacaatgagatt
gcagctctggaggcgacaggcatcttcaagactctctcacagctcaagaaaattaacctg
agtaacaacaagatcacagagatcgaggacggagcatttgagggcgccatcgctgttaac
gagctgcacctgactgccaaccagatggactcggtgcggagcggcatgttccgtgggctg
gaggggctgcgcacactgatgctgaggaacaaccgcctcagctgcgtccacaacagcagc
ttcactgggctgcgcaacgtgcgtctcctctcgctctacgacaaccagctcaccaccatt
acccctggggctttcgacaccctgcagtctctctccacactgaacctgctggctaacccc
ttcaactgtgactgccggctggcctggcttggggactggctgaggaccaggaagattgtg
actggcaacccgcgctgccagcgccctgccttcctcaaggagatccccctgcaggacgtg
gccttcctggattttcgctgcgaggagggccaggaggaggcgagctgtgtgccacgaccc
cagtgccccagcgagtgtacctgcctggagacggtggtgcgctgcagcaacaagcacctc
agagccctgcccaggggcatccccaggaatgtgaccgagctgtatttggatggaaaccag
ttcagtattgtgccaaaagagctttcttcctttaaataccttcagcttgtggatctcagt
aacaacaaaatcagctcactgacgaactcatccttcaccaacatgagccagctcacaacg
ctgatcctgagctacaactccctgcgctgcatcccagtcctggcattcaggggcctgcgc
tccctccgtctgctgtctctccatggcaacgaggtgtccgagctgctggaggggatattc
agtgatgtagcatctctctctcacctggcaatcggagcaaaccccctgtactgcgattgt
cgcctgcgctggctgtctgactgggtgaagactggctacaaagagccagggatcgcacgt
tgcacagggccggctggcatggagggcaaactgcttctcaccacgccagccaagaagttt
gagtgccagggtccgatagaccctgctgtcctggccaagtgcagtccctgtacctcgaac
ccgtgccacaaccagggcacctgccagagcgaccccgtggaggtttacaagtgtacctgc
tcaccaggattcaaggggaaggactgtgagacagccctaaacgcctgcatcagcaacccc
tgcgctaatgagggaacctgtcagcccagcccgggggagagcggaggatacacctgcacc
tgtccgcaggggttcaagggtccagcctgtgaggtgaatctcgacgactgtgaggacaac
gactgtgaaaccggagccacctgtgtggacggagtcaacaactacacttgcctgtgcccc
ccttatcacactggtgacctgtgtgaggagttggaagatgtctgctctcctggaaggaac
ccgtgtcagcaaggctctaagtgcgtggtcactgcctcgggacccaagtgtgagtgtgcg
cctggcttcgtgggtgacgactgcagtgtgagctatgatgactgcgtgcatcatcgctgt
cagaacatggctagatgtatcgatgagctcaatggctacacctgtctctgtgctgagggc
tacagcggccagctctgtgagtttccctcacgctccctcattccctcctctccctgtgaa
ctggttgaatgtcagaacagcgccccctgtgtagagcggggagggcgtgcgctgtgccag
tgtctgccaggcttcggggggccacgctgtgagaagctggtgagcgttaacttcgtggac
cgagactcttatctgcagctgagtgacctgaagaactggccccacgctaacatcactctg
caggtctccacagcagaggacaatgggatcctgctctataatggggacaatgaccacatc
gctgtggagctctaccagggtcacgtcagggtcagttatgacccgggcagccagcccagc
cacgccatctacagcactgaaaccattaacgatggacagttccacacagtggagctggtg
acctttgaccagatggtgaacctttcgattgacggaggcgccccgatgaccatggacagt
ttcggaaagctacaccccctgaatggagaggcaccgctatacgtggggggaatgccggtc
gatgtgaacgctgctgccttccggctctggcagatccagaacggctccagcttccacggc
tgcatccagaacctgtacatcaacaacgagctgcaggacttcaccaagacccagatgaag
ccgggcgtggtgccaggctgtgagccctgccgcaagatctactgccttcacggcatctgc
cagcccgacggtgccacgggacccgtgtgccactgccagccaggctggagcggagtgcac
tgtgaccagcctgccagcaacccctgccagggcaacaagtgtgttcatggcacctgcgtg
ccactcgacatgctgtcctatcgctgtgagtgcaaggagggataccgcggtgccctgtgt
aaccaacaggtggagctctttaacccctgcaataaactgcaatgtaaacacggggactgc
cagatctcagacgcaggggaggcctactgtcactgtgacagcggctacagtggggacctc
tgtgacacagagtcggaatgccgaggggaggcagtgagggattactaccaggtgcagcgc
ggctatgccatctgccagaccacacgcatggtggcgtgggtagagtgcagcggggcgtgt
gagacgggtgcctgctgcagcagccagcgcatgaagcgcaggaaatacacctttgagtgc
agcgacgggacctccttcacagaggaagtggagaagaccatcaagtgcggctgcacgggg
tgcatgtag
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integrated database retrieval system
