Burkholderia contaminans: NL30_12680
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Entry
NL30_12680 CDS
T03969
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bcon
Burkholderia contaminans
Pathway
bcon03030
DNA replication
bcon03410
Base excision repair
bcon03420
Nucleotide excision repair
bcon03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bcon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NL30_12680 (ligA)
03410 Base excision repair
NL30_12680 (ligA)
03420 Nucleotide excision repair
NL30_12680 (ligA)
03430 Mismatch repair
NL30_12680 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bcon03032
]
NL30_12680 (ligA)
03400 DNA repair and recombination proteins [BR:
bcon03400
]
NL30_12680 (ligA)
Enzymes [BR:
bcon01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NL30_12680 (ligA)
DNA replication proteins [BR:
bcon03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NL30_12680 (ligA)
DNA repair and recombination proteins [BR:
bcon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NL30_12680 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NL30_12680 (ligA)
MMR (mismatch excision repair)
DNA ligase
NL30_12680 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NL30_12680 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
MctB
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AKM40679
UniProt:
A0A3N8QUE0
LinkDB
All DBs
Position
1:2877112..2879187
Genome browser
AA seq
691 aa
AA seq
DB search
MARTQAEPPASQPDVRAAWLRDQLEQANYAYYVLDQPDLPDAEYDRLFRELQQLEADHPE
LVTPDSPTQRVGGEAAGGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALDKTTDLAGS
VTEPVEYACELKFDGLAISLRYEQGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGKN
VPAVLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITAQRPLSFF
AYGIGVLDGMPMPDTHSALLDWYESLGLPVNRERAVVHGAEGLLDFFRKVGEKRESLPYD
IDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL
EPVFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFV
MPTECPVCGSKIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLV
ELNLVRTPADLFNLGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGES
TAKDLAKHFGSLTPIMDASIEELLEVNDVGPIVAESLHQFFAEEHNRTVIEQLRAPGKVT
WPEGPPAPKAPQGVLAGKTVVLTGTLPTLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGA
EAGSKLAKAEELGIPVLDEDGLHQLLEGNTP
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggcccgaacccaagccgaaccgccagccagccagcccgacgtgcgcgccgcgtggctg
cgcgatcaactcgagcaggcgaactacgcctactacgtgctcgaccagccggatctgccc
gacgcggaatacgaccggctgttccgcgaactgcagcagctcgaagccgaccatcccgaa
ctcgtgacgcccgattcgccgacgcagcgtgtcggcggcgaggcggccggcggtttcacg
ccggtcgtccatgacgcaccgatgctgtcgctgaacaacggcttcgccgacgaggacatc
gtggcattcgacaagcgtgtcgccgatgcgctcgacaagacgaccgatctcgccggctcg
gtgacggagcccgtcgaatacgcatgcgaactgaagttcgacggtctcgcgatctcgctg
cgctacgagcagggcgtattcgtccaggcgtcgacgcgcggcgacgggacgacgggcgag
gacgtaaccgagaacgtgcgcacgatccgctcgattccgctgaagctgaagggcaagaac
gtgccggccgtgctcgacgtgcgcggcgaggtactgatgttcaagcgcgatttcgcacgc
ctgaacgaacgccagcgcgcggccgagcagcgcgaattcgcgaacccgcgcaacgcggcg
gccggcagcctgcgccaactcgactcgaagatcaccgcgcagcgcccgctgtcgttcttc
gcgtacgggatcggcgtactcgacgggatgccgatgcccgatacgcacagcgcgctgctc
gactggtacgagtcgctcggcctacccgtgaaccgcgagcgcgcggtcgtacacggcgcc
gaaggcttgctcgacttcttccgcaaggtcggcgagaagcgcgagtcgctgccatacgac
atcgacggcgtcgtgtacaaggtcaaccggcgcgacgagcaggagcgcctcggcttcgtg
tcgcgcgcgccgcgttttgcactcgcgcacaagttccccgcgcaggaagcgctgaccaag
ctcgtcgcgatcgacgtgcaggtcggccgcaccggcgcgatcacgccggtcgcgcgtctc
gagcccgtgttcgtcggcggcgcgaccgtgaccaacgcgacgctgcacaacgaggatgag
gtgcgccgcaaggacatccggatcggcgataccgtgatcgtgcgccgcgcgggcgacgtg
atccccgaggtggtcggcgcgttgctcgaccggcgcccggccgatgcggccgaattcgtg
atgccgaccgaatgcccggtgtgcggctcgaagatcgagcgcctgccggacgaggcgatc
gcgcgctgcacgggcggcctgttctgcccggcgcagcgcaagcaggcgctgtggcacttc
gcgcagcgtcgcgcgctcgacatcgacgggctcggcgagaagatcatcgaccagctcgtc
gagctgaatctcgtgcgcacgccggccgacctgttcaatctcggcttcgcgacgctcgcc
gaactcgaccggttcgccgagaagtcggcgcagaacctgctcgactcgctcgagaaggcg
aagcatacgacgctcgcgcgcttcatctacgggctcggcattcgtcacgtgggcgaatcg
accgcgaaggatctcgcgaagcatttcggctcgctgacgccgatcatggacgcatcgatc
gaagagctgctcgaagtcaacgacgtcgggccgatcgtcgccgagtcgttgcaccagttc
ttcgcggaagagcacaaccggaccgtgatcgagcagttgcgcgcgccgggcaaggtgacg
tggccggaagggccgcccgcgccgaaggcgccgcagggtgtgctggccggcaagacggtc
gtgctgacgggcacgctgccgacgctcacgcgcgatgccgcgaaggaaatgctcgaagcg
gcgggcgcgaaagtggccggctcggtatcgaagaagacggattacgtggtcgcgggcgcc
gaagccggcagcaagctcgctaaggccgaggaactcggcatccccgtgctggacgaagac
ggcctgcaccaactcctggagggcaatacgccatga
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integrated database retrieval system
