Basilea psittacipulmonis: IX83_06380
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Entry
IX83_06380 CDS
T03226
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bpsi
Basilea psittacipulmonis
Pathway
bpsi03030
DNA replication
bpsi03410
Base excision repair
bpsi03420
Nucleotide excision repair
bpsi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bpsi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IX83_06380 (ligA)
03410 Base excision repair
IX83_06380 (ligA)
03420 Nucleotide excision repair
IX83_06380 (ligA)
03430 Mismatch repair
IX83_06380 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpsi03032
]
IX83_06380 (ligA)
03400 DNA repair and recombination proteins [BR:
bpsi03400
]
IX83_06380 (ligA)
Enzymes [BR:
bpsi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IX83_06380 (ligA)
DNA replication proteins [BR:
bpsi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IX83_06380 (ligA)
DNA repair and recombination proteins [BR:
bpsi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IX83_06380 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IX83_06380 (ligA)
MMR (mismatch excision repair)
DNA ligase
IX83_06380 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IX83_06380 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
RNA_pol_A_CTD
5_3_exonuc
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
AIL32988
UniProt:
A0A077DII8
LinkDB
All DBs
Position
complement(1460272..1462353)
Genome browser
AA seq
693 aa
AA seq
DB search
MKNLNLFDEHVSPTPEERVKELKALIHRYDEAYYVYDDPIVTDADYDQVMRELQALERQY
PDLLTIDSPTQRVGGTPLSAFSSVSHRVPMLSLSNAFEYADVVSFNRRVVEGLQEEGYLP
LHEEVEYDCSLKFDGLAVNLRYENGVLVQASTRGDGQVGEDVTANIRTIRSIPLRLKATR
FPRVLEVRGEVLMSHAEFQKLNAKQLAMGQKPFANPRNAAAGSLRQLDSKITAKRSLSFY
TYGWGEIQGFDDPLPLTQSAMIEWFHEMGLPVAQERKTGKGVDTLTAFFEHIERIRDELP
FDIDGVVYKVNKIEYQQRLGFISKSPRFAIAHKFPAQEVSTTLLDIDIQVGRTGALTPVA
RLEPVNVGGVTVTNATLHNEDEIRRKDIRIGDKVVVRRAGDVIPEVVRPLTVWRETLETR
PFVMVSVCPECQSAIERLPGEAVWRCTGGLFCPAQRKQSIIHAVSRKALDIDGLGEKVVI
QMVDKGLIKNLADIFYLSKLDLARLDHFGQKSIDNLMNAIEKSKHVKLENLIFALGIRHV
GESTARDLARTFGSLEKLMAATIEDLLKVNDIGQVVATSIVHFFAEAHNQAVIQQLIKAG
LNPQENQVTADSGSLKLEQLSFVITGTLPSYSRDEAADLIREHGGQVMSAVSSKTDYLLA
GEKAGSKLEKAEKLGVKIISEADLLSMIQPNAE
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatttaaatctatttgatgaacatgtttcgccaacaccagaggaacgtgtaaaa
gagttaaaagcgttgattcatcgttatgatgaagcttattatgtttatgatgatcccatt
gtcacggatgctgattatgatcaagtcatgcgtgaattgcaagcattagaacgccaatat
ccagatttattaaccatcgactcaccaacacaaagagtaggtggtacgccattatcagcc
ttttcatctgtttcgcatcgtgtaccgatgttgtctttgtcaaatgcctttgagtatgcc
gatgtcgtatcgtttaatcgacgtgtcgtagaaggattgcaggaagaagggtatttgcct
ttgcatgaagaagttgaatatgactgctcattgaagtttgatggtttggccgttaatttg
cgatatgaaaatggtgtattggtacaggccagtactcgtggcgatggacaggtgggtgaa
gatgttaccgcaaacattcgaaccataagaagtattccgttgcgattgaaagcgactcgt
tttcctcgtgtattagaggttagaggcgaagtgttaatgagtcatgccgagttccaaaaa
ctcaatgctaaacaattagccatggggcaaaaaccatttgctaatccgagaaatgcggcg
gcgggaagtttaagacaattagattctaaaattaccgctaaacgttcattgagcttttat
acatacggatggggtgagattcaagggtttgatgatcctttgccacttacccaatcggct
atgattgagtggtttcatgaaatgggcttgcctgttgctcaagaaagaaaaacgggcaaa
ggggtggacaccttaacggcgttttttgaacatattgaacgcattcgagatgaacttcct
tttgatattgatggggtagtgtataaagtcaataaaatcgagtatcaacagcgtttaggt
tttatttctaaatcccctagatttgcgattgctcataaatttcccgctcaagaagtgagt
accactttattagatattgatattcaagtagggcgtacaggggctttaacgccagttgca
cgattagaacctgtgaatgtaggcggggtgacggtcacgaatgccactttgcataatgaa
gatgaaattagacgtaaagatattcgtatcggcgataaagtagtggtgcgtcgtgcaggg
gatgtgattccagaagtggtgcgtccattgacggtttggagagaaacgttggaaacacga
ccttttgtgatggttagtgtgtgtccagaatgtcagtctgctattgaacgtttgccaggt
gaggcggtttggcgatgcacaggcggtttattttgccctgctcaaagaaagcaaagtatc
attcatgcggtatctcgaaaagcactggatattgatggtttgggcgaaaaagtcgtgatt
cagatggtcgataaaggcttaatcaaaaatctggcggatattttttatctaagtaaattg
gatttagctcgcttggatcattttggacaaaaaagtattgataatttgatgaatgcgatt
gaaaaaagcaagcatgttaagttagaaaacttgatatttgctttgggtattcgtcatgtg
ggcgaaagcacagcaagagacttggctcgtacgtttggtagcttagaaaagctgatggcg
gcgacgattgaggatttgctaaaagtcaatgatattggccaagtggttgcgacttctatt
gttcatttttttgcagaagctcataatcaagcggttattcaacagctgataaaagcaggt
ctcaatccccaagaaaaccaagtgacggctgattcgggatcgttaaaattagaacaatta
agttttgtgataacaggcacattaccaagctattcaagggatgaagcggcagacttgatt
cgtgaacatggtgggcaagtgatgagtgcggtatcttccaaaacagactatttgttagcg
ggagaaaaagcaggatccaaactggaaaaagcagagaaattgggcgtgaaaatcatctca
gaagcagacctattatccatgatccaaccaaacgctgaataa
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