Brassica rapa (field mustard): 103874292
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Entry
103874292 CDS
T03449
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein GMI1 isoform X2
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
brp
Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
brp03036
]
103874292
03400 DNA repair and recombination proteins [BR:
brp03400
]
103874292
Chromosome and associated proteins [BR:
brp03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
103874292
DNA repair and recombination proteins [BR:
brp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
103874292
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
103874292
NCBI-ProteinID:
XP_018515055
LinkDB
All DBs
Position
A06:21748372..21757536
Genome browser
AA seq
1625 aa
AA seq
DB search
MRLFIYSLSHSTSLYPLVSNTKTRFSIVLCVFFSSGCVFLQFYLCLSSQKMSNRRPLKRA
LVQVDDDEEEDKFYKLKILLPNGTNVTLTLNNPQPEMSMRNFVNLVKEEYEKTRKSCELS
GKMRKRIDWNLAAESYLDFNGEKIRGMVRLETFKPDMCNILRLDDGSGEATTMYENMWDL
TPDTDMLKELPENYSFETALADLIDNSLQAVWSCSPGNRRLISVDVLEDRISVFDSGPGM
DSSKENSIAKWGKIGASIHRAHKSKAIGGKPPYLMPFFGMFGYGGAYACMHLGMRTLVSS
KTKQSKKVFTLQLNKEALIGNRSTSGKNWKVDGGMRDPLEEEMKLSPHGSFTKVEIFEWN
CKIPEIYQLQCRLKDIYFPYIQYDEVSKTGRTLRPVEFQVHGEDLTEIVGGEVATTNLNS
KGEEFWFQIRFCEKRKGTSQEANARLKFVYFPIVHGKERIDIIMESLEKEGYKVSESFQA
FGRLSVRRLGRLLPEVPWVSIPFMERGARATTLQKCCQRVKCFVDLDAGFVPTPSKTDLA
SQNLFSVALKNFGSKSKEKDNDVSMVIHREGKSLAYGQVEKGYEEWVLKMHKSYDEEDAL
GEDEATVIFDSLDKKALCISPDCEAVRVHKVMKRKSKSWERGQKIKIMKGACAGVHKNDV
YATIDYFLIENFEDETGGDARIICRQINFSEEEGCMLLTIKGISKLEIRKSSSFPISIID
TEKCVLIDDNEWNRKLVKQKEKDPSRIDLLDEKDCRTLKFNGETTIGASVCAGQTPPQQI
VAVVRPASYTSSKLSKKLDQKHIVKMDGEMLMEVELQGTEMKSRVKNAKPLYSDRCFPTN
RGGLHGLYIFQLESKIPHLFKKAGTYIFSFSVGNSVTCKKKVIVKPSSKVGSWKLGGNQE
TINVRVGSSLPPLSIYCLDEYENQIPFSSVPSLEVRLKASPEFEVPVYKIEANLDRGILK
LMNMVVQTDALDDIRPDYEATLEICSRDEPFSVSVDCIVEPGPLKCVVEKDAHALENLLP
DFTVENFILEMFDEYNNHVAEGTNVPICTSGFFIQDRMCLDLKVDSDGCIDLSGILKVTA
GYGKPVSLSIMSGNKEIFKKESLVEIRELRLLTELPEYCTAGTNLTNLKFKVTDSYGIMD
TSINNDDKSECFHTLSIESDSSSVDSTTRYAFVHGSCKITSLSLPETAGAFSFKVFHSRH
PELHMNLKIQLTPAQTFERDGIGYSEPNPRIYLTPQSKMGSTTNPLVIPTQQTPPSQFRV
LSIREISSAISSQTAPVDMEQFSEYTEILKAKLNSYNERISEANECLKCLEAEQEEAVQE
LSALQASLEPHGVSFPECLSTKESMVKHIEEKYHNTAASVFCSLYINVPASKSMLLSKEG
VLGIVALLGSVASTPLSRVLSEYLGEVTMLALVCKSSRPGQNIDPMLQSEAARLERSITS
RFHVLCLGATSPWTGGLVENDPQRKLAMDDPKLPDGDPIPGFIGYAVNMIYLAEKELNIK
TYKGHGLRETLFYGVFGKLQVYETQTQVEEALLHISGDGAVSLDGFIAKGNEFICSGCSK
PEIHFPITVRENEEEKWSNLEEARNRVRRVEKKLVAARCLLSKLEKKMNKANERYDSATK
LSLES
NT seq
4878 nt
NT seq
+upstream
nt +downstream
nt
atgagactcttcatttactctctctctcactccacgtctctttatcctcttgtttccaat
actaaaactcgcttctctatcgtcctctgcgtcttcttctcatctggttgcgttttttta
cagttctatctctgcctttcctctcaaaagatgagcaaccggagaccgctcaagagagca
ctggttcaagttgatgatgatgaagaagaagataagttttacaaactcaagattctctta
ccaaacggcacaaatgtgacactcacacttaataacccacaacctgaaatgtcgatgagg
aatttcgttaatctggtgaaagaggagtatgagaaaactcggaagagctgtgagttgtca
ggaaaaatgaggaaacggattgattggaatctggctgctgaatcatatcttgactttaac
ggtgaaaagattagaggaatggttcgacttgagacttttaagcctgatatgtgcaatata
ctacgtcttgatgatgggtctggtgaagctaccactatgtatgagaatatgtgggatttg
acacctgatactgatatgcttaaagaactacctgaaaattatagctttgagactgctctt
gcggatctaattgataattctttgcaagctgtgtggtcttgttcccctggtaacagaaga
ctcattagtgtggatgttctagaagatcggatttcagtctttgattctggtcctggaatg
gacagtagcaaggaaaactcaattgctaagtggggaaaaataggggcttcaatacatagg
gcccacaaatccaaagctatcggaggcaaaccaccataccttatgccattctttgggatg
tttggatatggaggtgcatatgcgtgtatgcatttgggaatgcgtactttggtgtcttca
aagacgaaacagtccaagaaagtattcacactgcaactcaataaagaagctttgattggc
aatcgttctacctcaggaaagaactggaaggtcgacggtggaatgagagatcctttggag
gaggaaatgaagttatctcctcatggaagcttcacaaaggttgagatctttgaatggaat
tgtaaaatcccagagatatatcaacttcagtgcagacttaaggatatttattttccttac
atccagtatgatgaagtctctaaaacgggaaggactctgaggcctgttgagtttcaggtc
catggagaggatttaactgagatagtgggtggagaggttgccaccaccaacctaaactcc
aagggtgaagagttttggtttcagattcgattctgcgaaaaaagaaaagggacatcacaa
gaggcaaacgctcgtctcaagtttgtatattttccaatcgtccatggaaaagaaagaatt
gatataattatggaaagcttagagaaggaaggatataaagtttctgaaagcttccaagct
tttggtcgtctttcagtacgaaggcttggccgtctactcccagaagttccttgggtatca
attccattcatggaaagaggagccagagccactactctgcagaaatgttgccaaagagtg
aaatgttttgtcgatttggatgctggttttgtcccaacaccctcaaagactgatcttgca
agccaaaacctattctctgtggctctgaaaaactttggtagtaaatctaaggagaaggat
aacgatgttagtatggtgattcatagagaaggaaaaagtttggcgtatgggcaagtggag
aagggttatgaggaatgggttcttaagatgcataagtcatatgatgaagaagacgcactg
ggtgaagatgaagcaaccgttatttttgattctttggataagaaagctctttgcatatct
cctgattgtgaagctgtgagggtgcacaaggtaatgaagcgaaaaagtaagtcatgggaa
cgtggacagaagatcaagattatgaaaggagcatgtgcaggagttcacaagaacgatgtc
tatgcaaccattgactacttccttatagaaaactttgaagatgagacaggaggtgatgct
cggattatatgcaggcaaatcaatttctctgaggaagaaggatgcatgcttttaaccatt
aaaggaatctcaaaactggaaattcgaaaatcttcatctttcccaattagtattatagac
accgaaaagtgtgtactgattgatgataatgaatggaacagaaaacttgtcaagcaaaaa
gaaaaggatccatcaagaattgatttgctggatgagaaagactgcagaacattgaaattt
aatggggaaacaactattggtgcatcagtgtgtgctggacaaaccccaccacaacagatt
gttgcagttgttagacctgctagctacacatcttcaaagctatctaaaaagttggaccag
aaacatattgttaagatggatggtgagatgctcatggaagtagaactacaaggcacagaa
atgaaatcaagggtgaagaacgcaaaacctttgtattcggatcgatgttttcctacaaac
cgtggagggttgcatggtctttacatctttcaacttgagtccaagatcccacacttgttc
aagaaagctggcacttacattttcagtttctctgttggtaattcagttacttgtaaaaag
aaggtaattgttaaaccatcttctaaggtgggaagttggaagcttggtggtaatcaagag
accattaatgttagggtgggatcgtctcttccacctttatctatctattgtttggatgag
tatgagaatcagataccattcagttctgttccaagtctggaagttagactgaaagccagc
ccagaatttgaagtcccggtttacaagattgaggccaacctagatcgtggaattctcaaa
ctcatgaatatggtcgttcagaccgatgcgttggatgacatcagaccagattatgaagca
accttagaaatatgctcaagggatgagccattctctgtctctgttgattgtatagttgaa
cctgggcctttgaagtgtgttgtcgagaaagatgcacatgctttagaaaacttgcttccg
gattttactgttgaaaacttcatcttggagatgttcgatgaatataataaccatgttgca
gaaggtaccaatgttccgatttgtactagtggcttttttatccaagacaggatgtgctta
gacttaaaggttgatagtgatggctgcattgatctgtctgggattctcaaagtcacagca
ggctatggcaaacccgtatcactctctataatgtctggcaataaagagatcttcaagaaa
gagtctctagttgagataagagagctcaggctgttaacagagctcccggagtactgtact
gctggtacaaatcttacaaacctcaagtttaaagtgacggattcatatggaattatggat
actagtatcaacaatgacgataaatccgagtgtttccacaccttgagcattgaatccgat
tcaagcagcgttgatagtacaaccagatatgcctttgttcatggctcctgcaaaatcact
tctctttccttacctgagactgcgggtgccttctctttcaaggttttccattctaggcac
cctgagcttcatatgaacctaaagattcagctaactcctgctcaaacatttgaaagagat
ggaattggttattctgaacctaatccaaggatatatctaacacctcaatcaaagatgggt
tcaactacaaatccattggtgattccaactcaacagactccaccttcacagtttagagtt
ttgtccattagagaaatatcatcggctatcagtagccaaactgccccagtggatatggaa
cagttcagtgagtacactgagatactaaaagcaaagctcaatagttacaatgaaaggata
tctgaagcaaatgagtgtctaaaatgtttggaggctgaacaagaagaggctgtgcaagag
ttgagtgccttgcaagcttctctggaacctcacggtgtgtcgttcccagagtgcctatct
accaaagaatcgatggtgaaacacatagaagagaagtatcataacacagcagcatcagtg
ttctgttctctgtacataaatgtaccggcttcaaagtctatgcttctgtcaaaggaaggt
gtgctcggcatcgtagcgcttcttggttcagttgcctcaacccctctaagcagggtattg
tctgagtatttgggagaagtcactatgctagctttggtatgcaaatcgtcaagacctgga
cagaacattgatcccatgcttcaatccgaagcagctaggctcgaaagatcaattaccagt
cggttccatgttctatgccttggtgcaactagtccctggactggtggacttgtggagaat
gatcctcagaggaaactagccatggatgatccaaaacttcccgatggagatcccataccg
ggcttcataggctatgcagtgaacatgatctatttggctgaaaaagagctaaacattaaa
acatataaaggtcacgggcttagggaaacgctgttctatggtgtgtttgggaagttacag
gtttatgaaacccaaacacaggttgaagaggctcttctacacatcagtggtgatggtgca
gtatcgttagatggatttatagcaaaaggaaacgagtttatatgttccgggtgcagcaaa
ccggagattcatttcccgattacagtaagggaaaacgaagaagagaagtggagcaacttg
gaagaagcaagaaacagagtgagaagggttgaaaagaagttagtggcggcgaggtgtttg
ttgagtaagttggagaagaaaatgaacaaggctaatgaaagatatgacagtgcaacaaag
ctttctctagaaagctaa
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