Bacillus subtilis subsp. subtilis RO-NN-1: I33_0750
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Entry
I33_0750 CDS
T01837
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bsr
Bacillus subtilis subsp. subtilis RO-NN-1
Pathway
bsr03030
DNA replication
bsr03410
Base excision repair
bsr03420
Nucleotide excision repair
bsr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bsr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I33_0750 (ligA)
03410 Base excision repair
I33_0750 (ligA)
03420 Nucleotide excision repair
I33_0750 (ligA)
03430 Mismatch repair
I33_0750 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bsr03032
]
I33_0750 (ligA)
03400 DNA repair and recombination proteins [BR:
bsr03400
]
I33_0750 (ligA)
Enzymes [BR:
bsr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
I33_0750 (ligA)
DNA replication proteins [BR:
bsr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
I33_0750 (ligA)
DNA repair and recombination proteins [BR:
bsr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
I33_0750 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I33_0750 (ligA)
MMR (mismatch excision repair)
DNA ligase
I33_0750 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I33_0750 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
zf-NADH-PPase
RNA_pol_A_CTD
HHH_3
zf-IS66
zf-tcix
HNOB
Zn-ribbon_8
Motif
Other DBs
NCBI-ProteinID:
AEP89748
LinkDB
All DBs
Position
697756..699762
Genome browser
AA seq
668 aa
AA seq
DB search
MDKETAKQRAEELRRTINKYSYEYYTLDEPSVPDAEYDRLMQELIAIEEEHPDLRTPDSP
TQRVGGAVLEAFQKVTHGTPMLSLGNAFNADDLRDFDRRVRQAVGDDVAYNVELKIDGLA
VSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKMNRELSIEVRGEAYMPKRSFEA
LNEERIKNEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVETQSQGLD
FLDELGFKTNQERKKCGDIEEVITLIDELQAKRADLPYEIDGIVIKVDSLDQQEELGFTA
KSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAILEPVKVAGTTVSRASLHNEDLI
KEKDIRILDKVVVKKAGDIIPEVVNVLVEQRTGEEKEFSMPTECPECGSELVRIEGEVAL
RCINPECPAQIREGLIHFVSRNAMNIDGLGERVITQLFEENLVRNVADLYKLTKERVIQL
ERMGEKSTENLISSIQKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLENLKKASKEE
LLAVVEIGEKMADAVITYFHKEEMLELLNELQELGVNTLYKGPKKVKAEDSDSYFAGKTI
VLTGKLEELSRNEAKAQIEALGGKLTGSVSKNTDLVIAGEAAGSKLTKAQELNIEVWNEE
QLMGELKK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggacaaagaaacagcgaagcagcgggcagaagaactgcgccgcaccatcaacaagtat
agctatgaatattacaccttagatgaaccgagcgtcccagatgccgaatacgacagattg
atgcaggagctgatcgcgatcgaggaggagcatccagacctcagaacgcctgactctcct
acgcagcgcgtcggcggagccgtgcttgaagcttttcaaaaagtcacccacggcacaccg
atgctcagtctgggcaacgcctttaatgctgatgatcttcgtgatttcgaccgccgtgtg
cgccaagccgtcggtgacgatgtggcgtataatgtggagctgaaaatagacggtcttgct
gtttctctccgttatgaagacggctattttgtcagaggagccacaagaggtgacggaacg
acgggagaggatattacggagaatctgaagacgattcgcaatatccccctcaaaatgaac
cgtgagctgtcgatcgaagtgcgcggcgaggcgtatatgccgaagcgttcgtttgaagca
ctcaatgaggaacggattaaaaatgaagaagaaccgttcgctaatccgcgaaatgccgcg
gcgggatcacttagacagctcgatccgaaaattgcagcgaaacgaaacctcgatatcttc
gtctacagtatagcggagcttgacgagatgggtgtggagacgcaaagccaggggcttgat
tttctcgacgaactcggatttaaaacgaatcaggaacgaaaaaaatgcggcgacatagaa
gaagtcattacgctgatcgatgagcttcaggcgaagcgcgctgacctgccgtacgaaata
gacggcattgtcattaaagtcgattctctcgatcagcaggaggagctcggttttacggcg
aaaagcccgcgctgggccatcgcgtataagtttcctgctgaagaggtcgtgacgaagctt
ctcgatatcgaattaaatgtcgggagaacgggtgtgatcacgccgaccgcgattcttgag
ccggtaaaagttgccggcacaacggtctcaagagcatcccttcataacgaagatttaatt
aaagagaaggacattcggattttggataaggttgttgtcaaaaaagcgggcgatatcatc
ccggaagtcgtgaatgtcctcgttgaacagcgcacaggagaagaaaaggaattcagcatg
ccgacggaatgtcctgaatgcggcagtgagctcgtccggatcgaaggagaagtggcgctt
cgctgcattaaccctgaatgtccggcgcaaatccgggaagggctgatccatttcgtttcc
cgcaatgccatgaacattgacggacttggcgaacgagtcatcacacagctgtttgaggag
aaccttgtccgcaatgtggcggatttatataagctgacgaaggaacgagtcatccagctc
gagcgcatgggcgaaaagtccactgaaaacctgatcagctccatccaaaaatcaaaagaa
aattcgttagagcgtttgctgtttgggcttggtatccgttttatcggatcaaaggccgca
aagacgcttgccatgcattttgaaagcttggagaacctgaaaaaagcctctaaagaggaa
cttctcgcggtagttgaaatcggtgaaaaaatggctgatgctgtgatcacctattttcat
aaagaagaaatgcttgaactcttgaatgaacttcaggagctgggcgtaaatacgctttac
aaaggcccgaaaaaagtaaaagcagaggacagcgattcttactttgccggtaaaacgatt
gttctgacaggaaagctggaagagctgtcaagaaacgaagccaaagcgcaaatcgaagcg
ctgggcggaaagctgactggaagcgtcagcaaaaacacagatttagtcatcgccggagaa
gcggcgggaagcaagctgacaaaagcacaagagctgaacattgaagtgtggaatgaagaa
cagttaatgggagagctaaagaaataa
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integrated database retrieval system
