Caenibius sp. WL: K5X80_09300
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Entry
K5X80_09300 CDS
T08345
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
caen
Caenibius sp. WL
Pathway
caen03030
DNA replication
caen03410
Base excision repair
caen03420
Nucleotide excision repair
caen03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
caen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K5X80_09300 (ligA)
03410 Base excision repair
K5X80_09300 (ligA)
03420 Nucleotide excision repair
K5X80_09300 (ligA)
03430 Mismatch repair
K5X80_09300 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
caen03032
]
K5X80_09300 (ligA)
03400 DNA repair and recombination proteins [BR:
caen03400
]
K5X80_09300 (ligA)
Enzymes [BR:
caen01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K5X80_09300 (ligA)
DNA replication proteins [BR:
caen03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K5X80_09300 (ligA)
DNA repair and recombination proteins [BR:
caen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K5X80_09300 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K5X80_09300 (ligA)
MMR (mismatch excision repair)
DNA ligase
K5X80_09300 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K5X80_09300 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
DNA_ligase_ZBD
BRCT
HHH_2
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
QZP06915
LinkDB
All DBs
Position
1941006..1943165
Genome browser
AA seq
719 aa
AA seq
DB search
MATTEAEAANELMRLARQIARHNRLYHAEDAPEISDAEYDALVRRNAELEAAFPHLIRPD
SPSQLVGHEIAASPLSKVAHEVRMMSLDNAFTDEEVAEFVGRVRRFLNLPAEEPVAFTAE
DKIDGLSCSLRYENGRLVRAATRGDGQVGEDVTPNVACIADIPQQLQGDAPAVFEIRGEV
YMEKQAFVALNAQLLAEAREKAESRGEVFDPTGVRQFANPRNAAAGSLRQKDPAITAKRP
LRFWAHGWGAASALPGATQQEVMAQIARWGLPISPEMIRCATLDEMLAAYARIAAGRANL
PYEIDGVVYKVDRLDWQQRLGFVAKAPRWAIARKFPAEQAETTVEAIDIQVGRTGKLTPV
GRLAPVLVGGVTVTNVTLHNRDEIARLGVRMGDRVVIQRAGDVIPQVVANLTREEERPAF
LFPDHCPECGSEAVAEEGEVDVRCTGGLICPAQRTERLKHFVSRGALDIDGLGEKTIDQF
FALGWLESPVDIFRLRKRRDAILALEGWQDKSVDNLLKAIEARREPDAARLLFGLGIRHV
GAVTARDLMKGLGDIHRLPGKAAEFAAYRSEHPREAEEKESPFNTRMSEAVKRIFEVGTD
GIGTAVGHALADFFHEDHNRQVWNDLLSEVSPPLYVVETKASAVAGKTVVFTGKLETMSR
DEAKAQAEMLGAKAAGSVSAKTDLVVAGPGAGTKLKKAAELGIEVIDEAAWAEIVKAAG
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atggccaccacagaagcggaagccgccaacgaattgatgcgccttgcgcggcagatcgcg
cggcacaaccggctctatcacgcggaggatgcgccggagatttccgatgcggaatacgac
gcgctggtgcggcgcaatgcggaactggaagctgcctttccacacctgatccggcccgac
agcccttcgcagcttgtcgggcacgagatcgccgcatcgccgctgtcgaaagtggcgcac
gaagtgcgcatgatgagcctcgacaacgctttcaccgatgaggaagtggccgagttcgtc
gggcgcgtgcggcggtttctgaatctgcccgccgaggaaccggtggcctttacggcggag
gacaagatcgatggcctgtcctgttcgctgcggtacgaaaacggcaggctggtgcgcgca
gcgacgcgcggcgacgggcaggtgggcgaggatgtgacccccaacgttgcctgtatcgcc
gatattccgcagcagttgcagggcgatgcccccgccgtgttcgagatacgcggcgaagtg
tacatggaaaagcaggcctttgtggcgctgaacgcgcagcttctggccgaagcgcgcgaa
aaggcggaaagccgcggcgaggtgttcgatcccacgggcgtgcggcaattcgccaacccg
cgcaatgccgccgccggatcgctgcgccagaaggacccggcgatcacagcgaagcgcccc
ttgcgcttctgggcgcatggctggggcgcggcgagcgctttgcccggcgccacgcagcag
gaggtgatggcgcagatcgcccgttggggtctgccgatttcgccggaaatgatccgctgc
gccacgctggatgaaatgctggcggcctatgcccggatcgcggcaggccgcgccaatctg
ccgtatgaaatcgatggcgtggtgtacaaggtcgatcggctcgactggcagcagcggctg
ggtttcgtcgccaaggccccgcgctgggccatcgcgcgcaagttcccggcggaacaggcc
gaaaccacggtggaagccatcgatatccaggtcggccgcacgggcaagctgacaccggtt
ggccgccttgccccggtgctggtgggcggggtgacagtgaccaatgtcacgctgcacaac
cgggacgagatcgcccggttgggtgtccgcatgggcgacagggtggtgattcagcgcgcg
ggcgacgtgatcccgcaagtggttgccaatctgacgcgggaagaggaacgcccggctttc
ctgttccccgatcattgccccgaatgtggcagcgaagcggtggcggaagaaggcgaagtc
gatgtgcgctgcaccggtggcctgatctgcccggcgcagcggaccgaacgcctgaagcac
ttcgttagccgtggcgcgctcgacatcgatggactgggcgagaagaccatcgaccagttt
ttcgcgctggggtggctcgaaagcccggtcgatatcttccgcctgcgcaaacggcgcgac
gcgattctcgcgctcgaaggttggcaggacaagtctgtggacaacctgttgaaagcgatt
gaggcgcggcgggaaccggatgccgcgcggctcctgttcggcctgggtatccgccatgtc
ggcgcggtgacggcacgcgatctgatgaaggggcttggcgatattcaccgtttgccgggc
aaggcggccgaattcgccgcctatcgcagcgaacatccgcgcgaggcggaggaaaaggaa
agcccgttcaacacccgtatgagcgaggcggtgaaacgcattttcgaagtcggcaccgac
gggatcggcaccgccgtcggccatgcgctggccgatttcttccatgaggaccacaaccgg
caggtgtggaacgatctcctctccgaagtctcgccgccgctctacgtggtcgagaccaag
gccagcgcggtggcgggcaagacggtggtcttcaccggcaagctggaaacgatgagccgc
gacgaagccaaggcacaggccgaaatgctgggggcgaaagcggccggctccgtttcagcc
aagaccgatctggtggtcgccgggccgggtgcggggaccaagctcaagaaagcggcggaa
ctgggcatcgaagtgatcgacgaagccgcctgggcggagatcgtcaaggcggcgggttag
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