Clostridium botulinum B1 Okra: CLD_1252
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Entry
CLD_1252 CDS
T00671
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cbb
Clostridium botulinum B1 Okra
Pathway
cbb03030
DNA replication
cbb03410
Base excision repair
cbb03420
Nucleotide excision repair
cbb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cbb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CLD_1252 (ligA)
03410 Base excision repair
CLD_1252 (ligA)
03420 Nucleotide excision repair
CLD_1252 (ligA)
03430 Mismatch repair
CLD_1252 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cbb03032
]
CLD_1252 (ligA)
03400 DNA repair and recombination proteins [BR:
cbb03400
]
CLD_1252 (ligA)
Enzymes [BR:
cbb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CLD_1252 (ligA)
DNA replication proteins [BR:
cbb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CLD_1252 (ligA)
DNA repair and recombination proteins [BR:
cbb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CLD_1252 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CLD_1252 (ligA)
MMR (mismatch excision repair)
DNA ligase
CLD_1252 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CLD_1252 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
HHH
PTCB-BRCT
DNA_pol_lambd_f
5_3_exonuc
DNA_ligase_ZBD
RNA_ligase
BRCT_2
HHH_3
ILEI
PADR1_Zn_ribbon
Motif
Other DBs
NCBI-ProteinID:
ACA45128
UniProt:
B1ING1
LinkDB
All DBs
Position
complement(3535628..3537622)
Genome browser
AA seq
664 aa
AA seq
DB search
MDNKLEKMKELVEELNQYAYEYYVLDNPSISDKEYDLKYDELVILEKKTEVTLPYSPTQR
VGDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELRYIVT
KKFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVPLKIKNSHVIEVHGEAI
MTKTAFEEYNKAAQVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGYNEGPEFKSYR
EMMNFIKNMGLPQDKYIKECTNMEEVEKEIEYIESIRGELDYDIDGAVIVVDDIKTREIL
GYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGGVTVKRATLNN
MDDIKRKNVKLGAKVLVRRSNDVIPEIMGVVEESLEESEEIQAPDRCPYCNSHLVQNGVH
YYCENTLSCKPQMVKSIVHFASREAMNIAGFSEKTAEQLFEKLDIKSIADLYKIKKEELL
TLEKFKDKKSQNLIDAIQNSKNCDLASFIYALGIPNVGKKTANDLVMKFKTLESIKNTTI
EQLVEVPDVGEIVAKSIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMDKTIVVT
GSLNNYSRGEIKDKLQSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEFS
NKIK
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggataacaagttagaaaagatgaaggaacttgtagaagaattaaatcagtatgcctat
gagtattatgtattagataatcccagtatatctgataaagaatatgacttgaaatatgat
gaattagtaattttggagaagaaaactgaagttacattaccttattcaccaacccaaagg
gttggtgataaaatattaggtgaatttagtaaatatactcacaaaggaagactctggagt
ttggataaagcccaaaatatggagcagttaatagagtggcataatagaaatttaaaagtt
atagagcaatataattctatgagtgaagataaattaccagagttgagatatatagttact
aaaaaatttgatggattaacggtaaattgtacctatgatgaaaatggaattttaataaag
agtgctacaaggggaacgggaattataggtgaagatataacagctcaaataaaaactata
aagacagttccattaaaaataaaaaatagccacgttatagaagtgcatggagaagccata
atgactaaaacagcttttgaagaatataataaagctgctcaagttccgctaaaaaattta
agaaatggagcagcaggagctcttagaaatttagatattaaagaaactgctagaaggaat
ttatccgcatttttttatgatgtaggctataatgaaggtccggaatttaaaagttataga
gaaatgatgaattttataaaaaatatgggattgcctcaggataagtatattaaagaatgt
actaacatggaagaagtggaaaaagaaattgaatatatagaatccataagaggagaacta
gattatgatatagatggagcagtaattgttgtagatgatattaaaacaagagagatatta
gggtatactataaaattccccaaatgggctatagcttataaatttgaagctaaggaaatt
actacaaagcttctagatgtagaatggaatgtaggaagaagcggaagagttactccaaca
gctttattagaacccgtagaactaggcggagtcacagtaaaaagagctacactaaataat
atggatgatattaagagaaaaaatgtaaaattgggtgctaaggttttagttagaagatct
aacgatgttataccggagataatgggagtagtagaagaatctttagaggaaagtgaggaa
atacaggcgccagatagatgtccttattgtaatagccatttagtacaaaatggagtacat
tattattgtgagaatacattatcttgtaaaccacagatggtaaaaagtatagtgcatttt
gctagtagagaagctatgaatatagcaggattcagtgaaaaaactgcagaacaacttttt
gaaaaattagatataaaatctatagcagatttgtataagataaaaaaagaagaactatta
actttagaaaaatttaaggataaaaagtctcaaaatcttatagatgctatacaaaatagc
aaaaattgtgatttggcatcctttatatacgctttaggtatacctaatgtaggtaaaaag
actgcaaatgatttagtaatgaaatttaaaactttagaatctataaagaatacaacaata
gaacaattagtagaagttccagatgtgggagaaatagtagctaagagcatatatgatttt
tttgaagacgaaaaaattataagtaacatagaagaattattaaatttgggtgtaaaacct
tattatgaagaagaaagaattgatgaaaatccttttatggataaaactatagttgtaaca
ggaagtttgaataattatagtagaggggaaataaaagataaattacagtctttaggagct
aaagtttctagtagtgtaagtaaaaatacagactatgtcttagtaggggaaaaaccagga
tctaaatatgaaaaagcaattgaattaggagtaaaagtaatcaacgaagaagaattttct
aataaaattaaataa
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