Corynebacterium glutamicum ATCC 13032 (Bielefeld): cg1401
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Entry
cg1401 CDS
T00244
Symbol
ligA
Name
(GenBank) DNA LIGASE
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cgb
Corynebacterium glutamicum ATCC 13032 (Bielefeld)
Pathway
cgb03030
DNA replication
cgb03410
Base excision repair
cgb03420
Nucleotide excision repair
cgb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cgb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
cg1401 (ligA)
03410 Base excision repair
cg1401 (ligA)
03420 Nucleotide excision repair
cg1401 (ligA)
03430 Mismatch repair
cg1401 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cgb03032
]
cg1401 (ligA)
03400 DNA repair and recombination proteins [BR:
cgb03400
]
cg1401 (ligA)
Enzymes [BR:
cgb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
cg1401 (ligA)
DNA replication proteins [BR:
cgb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
cg1401 (ligA)
DNA repair and recombination proteins [BR:
cgb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
cg1401 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
cg1401 (ligA)
MMR (mismatch excision repair)
DNA ligase
cg1401 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
cg1401 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
CAF19947
UniProt:
Q8NR20
LinkDB
All DBs
Position
1309798..1311840
Genome browser
AA seq
680 aa
AA seq
DB search
MTEDNAQLRRTWNDLAEKVRYHRDRYYNEQPEIPDADFDALFKQLQQLEEDHPELAVPDS
PTMVVGAPVAEQSSFDNVEHLERMLSLDNVFDEQELRDWLGRTPAKQYLTELKIDGLSID
LVYRNGQLERAATRGDGRVGEDITANARVIEDIPHQLQGTDEYPVPAVLEIRGEVFITVE
DFPEVNAQRIADGGKPFANPRNAAAGSLRQKNIEDVKKRRLRMISHGIGFTEGFSPASQH
DAYLALAAWGLPTSPYTEAVTDPEDVVKKVSYWADHRHDALHEMDGLVIKVDDIASQRAL
GSTSRAPRWAIAYKYPPEEVTTKLLDIQVGVGRTGRVTPFAVMEPVLVAGSTVSMATLHN
QSEVKRKGVLIGDTVVIRKAGEVIPEVLGPVVELRDGTEREYIFPTLCPECGTRLAPAKA
DDVDWRCPNMQSCPGQLSTRLTYLAGRGAFDIEALGEKGAEDLIRTGILLDESGLFDLTE
DDLLSSNVYTTNAGKVNASGKKLLDNLQKSKQTDLWRVLVALSIRHVGPTAARALAGRYH
SIQALIDAPLEELSETDGVGTIIAQSFKDWFEVDWHKAIVDKWAAAGVTMEEEVGEVAEQ
TLEGLTIVVTGGLEGFTRDSVKEAIISRGGKASGSVSKKTDYVVIGENAGSKATKAEELG
LRILDEAGFVRLLNTGSADE
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
gtgactgaagataatgctcaactgcgtagaacgtggaacgacttagccgagaaggttcgt
tatcaccgagatcgttattacaacgaacagccagagatccctgatgctgattttgatgcg
ctttttaagcagcttcagcagttggaagaagaccacccggagctcgccgtccctgatagc
cccaccatggttgtgggcgctccggtggcagagcaatcaagctttgacaatgttgagcac
ttggagcgaatgctcagcttggacaatgtttttgatgagcaggagttgcgtgattggttg
ggcaggacgccagccaagcagtatttgacggagttgaaaattgatggcttgtccatcgac
ttggtgtatcgcaatggccagttagagcgtgccgctactcgtggtgatggtcgcgtgggc
gaggacatcacggccaatgctcgcgtgatcgaagatatcccgcaccagcttcagggcact
gatgaatatcctgtgcctgctgtgctggaaattcgcggtgaggtgttcatcactgtggag
gatttcccagaggtcaacgcgcagcgcattgctgatggtggcaagccgtttgccaacccg
cgtaatgctgcggctggttctctgcgtcagaaaaatattgaggacgtgaagaagcgccgc
ctgcggatgatcagccatggcatcggtttcactgaaggctttagccctgcgtctcagcat
gatgcgtatctggcattggctgcctggggtttgcccacctcgccgtacacagaggctgtg
actgatccagaagatgtggtgaaaaaggtcagctactgggctgatcaccgccacgacgca
ctccatgagatggatggcctggtgattaaggtcgatgacatcgcatctcagcgtgctttg
ggttccaccagccgcgcgcctcgctgggccattgcgtacaagtaccctccggaggaggtc
accaccaagctgcttgatattcaggttggcgttggtcgcaccggccgtgtcaccccattc
gcggtcatggagccggttcttgttgcaggatcaacggtgtctatggcgacgctgcataac
cagagcgaagtcaagcgtaaaggcgtgctcatcggtgacaccgtggttatccgcaaggcg
ggcgaggttatcccagaggtgcttggccctgtcgtagagcttcgtgacggcacagagcgc
gagtacatcttcccaacgctgtgccctgaatgcggtacccgtctggcgcccgcgaaggcc
gatgacgtggattggcgttgccccaacatgcaaagctgtccaggtcagctgtccacgcgt
ttgacctaccttgctggtcgtggcgcttttgatattgaagcattgggcgaaaagggcgct
gaagacctcattcgcaccggcattttgcttgacgagtctggcctgttcgacctcacagag
gacgatctgctgagctccaatgtctacaccaccaacgccggcaaagtaaatgccagcggc
aagaaactgctggacaacctgcaaaaatccaagcagaccgacctctggcgagtcctcgtg
gcattatctatcaggcacgtaggccccaccgcagcgcgcgcccttgcaggtcgctaccac
tccatccaggcgcttatcgacgcccccctcgaggaactctccgaaaccgatggagtaggt
accatcattgcccaatccttcaaggactggttcgaggttgattggcacaaggccatcgtg
gacaagtgggcagccgctggtgtgactatggaggaagaagtaggggaggtcgctgaacaa
acccttgaaggcctaaccatcgtggtcaccggagggttggaaggcttcaccagagattcg
gtgaaggaagccatcatctcccgtggcggaaaagcctctggatctgtctcgaagaaaact
gactacgtggtgattggtgaaaacgcaggttccaaggccaccaaggcagaagaactaggg
ctgcgcattctggatgaggcaggattcgtccgtttgctcaataccggctcagctgacgaa
tag
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integrated database retrieval system
