Clupea harengus (Atlantic herring): 105904942
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Entry
105904942 CDS
T09045
Symbol
cpsf1
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 1
KO
K14401
cleavage and polyadenylation specificity factor subunit 1
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105904942 (cpsf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
char03021
]
105904942 (cpsf1)
03019 Messenger RNA biogenesis [BR:
char03019
]
105904942 (cpsf1)
Transcription machinery [BR:
char03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105904942 (cpsf1)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
105904942 (cpsf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF_A
MMS1_N
DUF2897
Motif
Other DBs
NCBI-GeneID:
105904942
NCBI-ProteinID:
XP_031442290
Ensembl:
ENSCHAG00000013393
UniProt:
A0A6P8GWH1
LinkDB
All DBs
Position
19:complement(9181459..9202958)
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AA seq
1451 aa
AA seq
DB search
MYAVYRQAHSPTAVEFSVYCNFISSEEKNLVVAGTSQLYVYRIIHDVENANKTEKSTDVK
SRKEKLEQVASFSLFGNVMSMASVQLASTNRDALLLSFKDAKLSVVEYDPGTHDLKTLSL
HYFEEPELRDGFVQNVHIPIVRVDPENRCAVMLVYGTRLVVLPFRRDTLTDEQEGIVGEG
QKSNFLPSYIIDVRELDEKLLNIIDMKFLHGYYEPTLLILYEPNQTWPGRVAVRQDTCSI
VAISLNIMQKVHPVIWSLSNLPFDCTQVMPVPKPIGGVVVFAVNSLLYLNQSVPPYGVAL
NSQTNGTTAFPLKVQDELRISLDCSQASFIGPDKMVISLKGGEIYVLTLITDGMRSVRSF
HFDKAAASVLTTCMMTMEPGYLFLGSRLGNSLLLKYTEKFQEPPMDEDEDEDNEKDKERD
KGEEPPSKKKRMDSSASWTAKSSMPDELDEIEVYGSEAQSGTQLATYSFEVCDSILNIGP
CANASMGEPAFLSEEFQNNPEPDLEVVVCSGFGKNGALSVLQRSIRPQVVTTFELPGCHD
MWTVISSEEKPEQSSTEEADSQNPEEEKQEPTIEDEKNKHGFLILSREDSTMILQTGQEI
MELDTSGFATQGPTVFAGNIGDNKYIIQVSPMGIRLLEGVNQLHFIPVDLGSPIVQCSVA
DPYVVIMTAEGVVTMFALKTDSYMGKTHRLALQKPQIHMQSRVITLCAYRDVSGIFTTEN
KVNFQAKEDVGERSHPETELVMQDMSNTVDDEEEMLYGDSGPPSSPKDEASYAASAARHS
GKGVHGKKEPTHWCIVVRENGVMEIFQLPDWRLVFLVKNFPVGQRVLVDSSAGQSATQEG
KKEEVTRQGDIPLVKEVSLVALGYNKSRPYLLVHVEQELLIYEAFPYDQKLAQSNLKVRF
KKMPHNINFREKKAKLSKRDKKAEGPGEDGAGVKGRVARFRYFRDISGYSGVFICGPSPH
WMLVTSRGAMRLHPMIIDGPIESFSPFHNINCPKGFLYFNKQGELRISVLPTYLSYDAPW
PVRKIPLRCTVHYVSYHVESKVYAVCTSVKEPCTRIPRMTGEEKEYETIERDDRYINPQQ
EKFSIQLISPVSWEAIPNTRIDLEEWEHVTCMKTVALKSQETVSGLKGYVALGTCLMQGE
EVTCRGRILILDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCSGYLVSAIGQKIF
LWSLKDNDLTGMAFIDTQLYIHQLISLKNFILAADVMKSISLLRYQEESKTLSLVSRDAK
PLEVYSIEFMVDNNQIGFLVSDRDKNLLVHMYLPEAKESYGGMRLLRRGDFNAGAHVNAL
WRMPCRGALDSTKKSLAWDNKHITWFATLDGGIGLLLPMQEKTYRRLLMLQNALTTMLPH
HAGLNPKAFRGLQSDRRLLQNPMRNILDGELLNKFLYLSTMERSELAKKIGTTSDIILED
LLDIDRVTAHF
NT seq
4356 nt
NT seq
+upstream
nt +downstream
nt
atgtatgccgtgtaccgtcaggcgcactctcctacggccgtggaattttctgtttactgt
aacttcatatctagtgaggaaaaaaacttggtggtcgcaggtacctcacagctctacgtt
taccgaatcattcatgatgtcgagaatgccaacaagaccgaaaagtccacagatgtcaag
agccgcaaggagaagctggaacaggtggcttccttctctctgtttggcaacgtcatgtcc
atggccagtgtccaactggctagcacaaacagagatgcccttctactgagctttaaagat
gcaaagctgtcagttgtggagtatgacccagggacccatgacctaaagacactctccctg
cattattttgaggagccggagcttagggacggatttgtccagaatgtacacatccctatt
gtgcgagtggaccccgagaaccgctgtgctgtgatgctggtctatggcacccggctggtg
gtgctccccttcaggagggataccttgacggacgaacaggagggaatcgtgggagagggg
cagaagtccaatttcctccccagctacatcatcgatgtccgggagctcgatgagaagctg
ctgaatatcattgacatgaagttcctgcacggctactacgagcccactctgctcatcctc
tacgagcccaaccagacttggcctgggcgtgtagctgtacgacaagacacctgcagtatc
gtggccatctccctcaacatcatgcagaaggtgcacccggtcatctggtcgctcagcaac
ctgcccttcgactgcacacaggtcatgccggtgcctaagccaatcggtggtgttgtggtg
tttgctgtgaactccctactgtatctgaaccagagtgttcctccctatggcgtcgccctc
aacagccagaccaacgggaccacggccttccccttgaaggttcaggatgaactgaggatc
tcactggactgttctcaggcctccttcattgggcctgacaagatggtcatctccctgaaa
ggaggagagatctatgttctcaccctcatcactgacggcatgaggagtgtgcgctccttc
cacttcgacaaggctgccgccagcgtgctcaccacctgtatgatgacgatggagccgggg
tatctgttcctgggctcccggctcggcaactccctgctgctgaagtacaccgagaagttc
caggagccgcccatggatgaggacgaagatgaagacaatgagaaggacaaggagagagac
aaaggggaggagccgcccagtaagaagaagcgcatggattcttcagccagctggacagct
aagtcatccatgccagatgaactggatgagattgaagtttacggcagcgaggcccagtca
ggcactcagctggccacctactcctttgaggtgtgtgatagcattttaaacatcgggccc
tgtgccaatgcctccatgggggagccagcgttcctgtcagaagagttccaaaacaaccca
gagcctgacctggaagtggtggtgtgttctggctttggcaagaatggagctctgtctgtc
cttcagaggagcattaggccacaggtggtcacgacctttgaactccccggttgccatgac
atgtggacggtcatatccagtgaggagaagccagagcagtcatccactgaggaggcagac
agtcagaatcctgaggaggagaagcaggagccgaccatagaggacgagaaaaacaaacat
ggctttctcattctgagcagagaggactccactatgatcctgcagacggggcaggagatt
atggagctggacaccagcggcttcgccactcagggccccactgtgttcgccggcaacatc
ggggacaacaagtacatcatccaggtgtcgcccatgggcatcaggctgctggagggggtg
aaccaactccacttcatcccggtggatctgggctctcccatagtgcagtgctccgtggct
gacccctatgtggtcatcatgacggccgaaggcgtggtcaccatgtttgcgctgaagact
gactcttatatggggaagacccacagactggctctgcagaagcctcagattcacatgcaa
tcacgcgtgatcacgctctgtgcctaccgcgacgtgagcggcatcttcaccacggagaac
aaggtcaacttccaggccaaggaggacgtgggggaaaggagtcacccagagactgagctg
gtcatgcaggacatgagtaacacagtggatgacgaggaggagatgctctatggcgactcc
ggccctccctccagccccaaagacgaggccagctacgcagcctccgctgcaaggcactct
gggaaaggggttcacggcaagaaggaacctacacactggtgcattgtggtcagagagaat
ggcgttatggagattttccagctgccagactggcgtctggtcttcttggtgaagaacttc
ccagttggacagagggtgttggtggacagttcagctggccaatcagcaacacaggaaggt
aaaaaggaggaggtgactcgtcagggagatatcccattggtcaaggaggtatccctggtg
gcactgggctacaataagagccggccctacctgctggtccatgttgaacaggagctactt
atctatgaagctttcccttatgaccagaaactagcccagagcaatttgaaagtgcgcttt
aaaaagatgccacataacatcaacttccgggagaagaaagccaagctctcaaagagggac
aagaaggctgaggggcccggtgaggatggtgcgggggtcaaaggtcgtgtggccagattc
agatacttcagggacatctctggatactcaggggtgttcatctgtgggccgtcgccacac
tggatgctggtgacgtcccgcggggccatgaggctccaccccatgatcatcgacgggccc
atcgagtccttctccccgttccacaacatcaactgccccaagggcttcctctacttcaac
aaacagggagagctgaggatcagtgtgttgcccacctacctctcatacgacgctccgtgg
cctgtccggaagattccgttaaggtgtacagtccattacgtgtcctaccatgtggagtct
aaggtgtatgcggtgtgcacgagcgtaaaggagccctgcacgcgcatccccaggatgacc
ggagaggagaaggagtacgagaccatcgagagagatgaccggtacataaaccctcagcag
gagaagttctctattcagctcatctcccccgtcagctgggaggccatcccaaacacacgt
attgatttggaggagtgggaacatgtgacctgcatgaagacggtggccctgaagagtcag
gagacggtgtctggactgaagggctacgtggctttgggaacctgtctcatgcagggggag
gaggtcacctgcagggggagaatcctgatcctcgatgtgattgaggttgtgcctgagccc
ggccagcccctgaccaagaacaagtttaaggtgctctatgagaaggagcagaaaggcccg
gtgactgcactctgccactgcagtggatacctggtgtctgccattggacagaaaatcttc
ctgtggagcctgaaggataatgatctgacgggtatggccttcatcgacacgcagctctac
atccaccagttgatcagcctcaagaacttcatcctggccgctgacgtcatgaagagcatc
tcgctgctgcgctaccaggaggagagcaagaccctctcactggtcagcagggatgccaaa
cctctggaggtgtacagcatagagttcatggtggacaacaaccagataggtttcttagtg
tctgacagggacaaaaatctgctggtccacatgtatctcccagaagcgaaagagagttat
gggggcatgcgtctgctgcgccgaggggactttaacgcgggcgcgcacgtgaacgcactg
tggaggatgccctgccgcggggcgctggacagcactaagaagtccctcgcctgggacaac
aagcacatcacctggtttgccacactggatggaggtattgggctgctgctgcctatgcag
gagaagacgtaccggcgtctgctgatgttacaaaatgccttgaccacaatgttgcctcac
catgcaggcctcaaccctaaagctttcagggggttgcaaagtgaccggcggttacttcag
aatcccatgcggaacattctggatggggagctcttgaacaagttcctgtacctgagcaca
atggaacgcagtgagttggccaagaagatcggtaccacttcagacattattttggaggat
ctcctggacattgacagagtaacagctcacttctaa
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integrated database retrieval system
