Campylobacter jejuni RM1221: CJE0689
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Entry
CJE0689 CDS
T00227
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cjr
Campylobacter jejuni RM1221
Pathway
cjr03030
DNA replication
cjr03410
Base excision repair
cjr03420
Nucleotide excision repair
cjr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cjr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CJE0689 (ligA)
03410 Base excision repair
CJE0689 (ligA)
03420 Nucleotide excision repair
CJE0689 (ligA)
03430 Mismatch repair
CJE0689 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cjr03032
]
CJE0689 (ligA)
03400 DNA repair and recombination proteins [BR:
cjr03400
]
CJE0689 (ligA)
Enzymes [BR:
cjr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CJE0689 (ligA)
DNA replication proteins [BR:
cjr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CJE0689 (ligA)
DNA repair and recombination proteins [BR:
cjr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CJE0689 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CJE0689 (ligA)
MMR (mismatch excision repair)
DNA ligase
CJE0689 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CJE0689 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
BRCT_2
N-glycanase_N
RPA_interact_C
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
AAW35801
UniProt:
Q5HVI4
LinkDB
All DBs
Position
621674..623617
Genome browser
AA seq
647 aa
AA seq
DB search
MKKEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRVFEEQNKDEISKDSPTQKI
APTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAKCEKNFFIEPKFDGASLNLLYENG
KLVSGATRGDGEVGEDITLNVFEIENIPKNIAYKERIEIRGEVVILKDDFEKINEKRALL
NQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGENTLNFTKHSEVMQFIRELGFLK
DDFVRLCANLDEVLKAYDELLVLREKKPMMMDGMVVRVDDLALCEELGYTVKFPKFMAAF
KFPALEKTTRLIGVNLQVGRSGAITPVAVLEPVNLDGVVVKSATLHNFDEIARLDVKIND
FVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPTCQSELLDEGTLIKCQNIDCEDRL
VNSIIHFVSKKCLNIDGLGENIVELLYKHKKITTLESIFHLKFNDFEGLEGFKEKKINNL
LNAIEQARECELFRFITALGIEHIGEVAAKKLSLSFGKEWYKQSFEAYANLEGFGEQMAL
SLCEFTRVNHTRIDEFYKLLNLKIEKLEIKSDGVIFGKTFVITGTLSRPRDEFKALIEKL
GGKVSGSVSKKTDYVLFGEEAGSKLSKAKELEVKCIDESAFNELVKE
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaagaagagtatttagaaaaagttgctttagctaatttgtggatgagggcatat
tatgaaaaagatgaacccttggctagcgatgaagaatacgatgctttaatcagagaatta
agagtttttgaagaacaaaataaagatgaaatttcaaaagactctccaacgcaaaaaata
gctcctactatacaaagcgagtttaaaaaaatagctcatttaaagcgtatgtggtcgatg
gaagatgtgtttgatgagagtgagcttagagcttgggcaaaacgcgcaaaatgtgaaaaa
aacttttttatagagcctaaatttgatggagcgagtttaaatttgctttatgaaaatggt
aaattagtaagcggcgccactaggggcgatggcgaagtgggtgaggatataacgcttaat
gtttttgagatagaaaatatacctaaaaatatagcctataaagaaaggatagaaattcgt
ggagaagtggtgattttaaaagatgattttgagaaaatcaacgaaaaaagagccctttta
aatcaaagtttatttgccaatccacgcaatgctgcaagtgggagtttaaggcagcttgat
acaagcatcactaaagaaagaaatttgaaattttatccttggggagtaggggaaaatacc
ttaaatttcaccaaacacagcgaggtgatgcaatttatcagagagcttggttttttaaag
gatgattttgtaagactttgcgctaatttagacgaagttttaaaagcttatgatgagctt
ttagttctaagagaaaaaaaacctatgatgatggatggaatggtggtaagagttgatgat
cttgcactttgtgaagaattaggctatacggtaaaatttccaaaatttatggcagctttt
aaatttcctgcgcttgaaaaaaccacgcgtttaataggggtaaatttacaagtaggaaga
agtggagcgatcactcctgtggcagttttagaacctgtaaatttagatggggttgtagta
aaatcagccacccttcataattttgatgaaattgcaagacttgatgttaaaatcaatgat
tttgtaagcgtgataagaagtggcgatgttatccctaaaatcactaaggtttttaaagag
cgtagagaaggtttagagatggaaatttcacgccctaagctttgtcctacttgccaaagt
gagcttttggatgaaggaactttaataaaatgtcaaaatatagattgtgaagatagactt
gtaaattctatcattcattttgtttctaaaaaatgtcttaatatcgacggactgggagaa
aatatagtagaacttttatacaagcacaaaaaaatcactacgcttgagagtatttttcat
ttaaaatttaatgattttgaaggtttggaaggctttaaagaaaagaaaattaacaatctt
ttaaatgccatagaacaagcaagagaatgtgagctttttcgttttatcacagctttagga
atagagcatattggcgaggttgcggctaaaaaattaagtttaagttttggtaaagagtgg
tacaagcaaagctttgaagcttatgctaatttagaaggttttggagagcaaatggcttta
agtctttgcgaatttacgcgtgttaatcatacaagaattgatgagttttacaagctttta
aatttgaaaatagaaaaacttgaaatcaaaagcgatggtgtgatttttggtaaaactttt
gtgattacaggcactctttcacgcccaagagatgagtttaaggctttgatagaaaagctt
gggggtaaggtaagcggctcggtttctaaaaagactgactatgtgctttttggagaagag
gcaggttctaagcttagtaaggctaaagagcttgaagtaaaatgtatagatgaaagtgct
tttaatgagcttgttaaagaatag
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