Campylobacter jejuni subsp. jejuni YH001: QZ67_00600
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Entry
QZ67_00600 CDS
T03744
Symbol
ligA_1
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cjy
Campylobacter jejuni subsp. jejuni YH001
Pathway
cjy03030
DNA replication
cjy03410
Base excision repair
cjy03420
Nucleotide excision repair
cjy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cjy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QZ67_00600 (ligA_1)
03410 Base excision repair
QZ67_00600 (ligA_1)
03420 Nucleotide excision repair
QZ67_00600 (ligA_1)
03430 Mismatch repair
QZ67_00600 (ligA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cjy03032
]
QZ67_00600 (ligA_1)
03400 DNA repair and recombination proteins [BR:
cjy03400
]
QZ67_00600 (ligA_1)
Enzymes [BR:
cjy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QZ67_00600 (ligA_1)
DNA replication proteins [BR:
cjy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QZ67_00600 (ligA_1)
DNA repair and recombination proteins [BR:
cjy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QZ67_00600 (ligA_1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QZ67_00600 (ligA_1)
MMR (mismatch excision repair)
DNA ligase
QZ67_00600 (ligA_1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QZ67_00600 (ligA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
BRCT_2
N-glycanase_N
RPA_interact_C
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
AJA54703
LinkDB
All DBs
Position
545625..547568
Genome browser
AA seq
647 aa
AA seq
DB search
MKKEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELSVFEEQNKDEISKDSPTQKI
APIIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAKCEKNFFIEPKFDGASLNLLYENG
KLASGATRGDGEVGEDITLNVFEIENIPKNIAYKERIEIRGEVVILKDDFEKINEKRALL
NQSLFANPRNAASGSLRQLDISITKERNLKFYPWGVGENTLNFTKHSEVMQFIRELGFLK
DDFVRLCANLDEVLKAYDELLALREKKPMMMDGMVVRVDDLALCEELGYTVKFPKFMAAF
KFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNFDEIARLDVKIND
FVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPTCQSELLDEGTLIKCQNIDCEDRL
VNSIIHFVSKKCLNIDGLGENIVELLYKHKKITTLESIFHLKFSDFEGLEGFKEKKINNL
LNAIEQARECELFRFITALGIEHIGEVAAKKLSLSFGKEWHKQSFEAYANLEGFGEQMAL
SLCEFTRVNHTRIDEFYKLLNLKIEKLEIKSDSMIFGKTFVITGTLSRPRDEFKALIEKL
GGKVSGSVSKKTDYVLFGEEAGSKLSKAKELEVKCINESAFNELVKE
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaagaagagtatttagaaaaagttgctttagcaaatttgtggatgagggcatat
tatgaaaaagatgaacccttggctagcgatgaagaatacgatgctttaatcagagaatta
agtgtttttgaagaacaaaacaaagatgaaatttcaaaagactctccaacgcaaaaaata
gctcctatcatacaaagcgagtttaaaaaaatagctcatttaaagcgtatgtggtcgatg
gaagatgtgtttgatgagagtgagcttagggcttgggcaaaacgcgcaaaatgtgaaaaa
aacttttttatagagcctaaatttgatggagcgagtttaaatttactttatgaaaatggt
aaattagcaagcggtgccactaggggcgatggcgaagtgggtgaggatataacgcttaat
gtttttgagatagaaaatatacctaaaaatatagcctataaagaaaggatagaaattcgt
ggagaagtggtgattttaaaagatgattttgagaaaatcaacgaaaaaagagccctttta
aatcaaagtttatttgctaatccacgcaatgctgcaagcgggagtttaaggcagcttgat
ataagcatcactaaagaaagaaatttgaaattttatccttggggagtaggggaaaatacc
ttaaatttcaccaaacacagcgaggtgatgcaatttatcagagagcttggttttttaaag
gatgattttgtaagactttgcgctaatttagacgaagttttaaaagcttatgatgagctt
ttagctctaagagaaaaaaaacctatgatgatggatggaatggtggtaagagttgatgat
cttgcactttgtgaagaattaggctatacggtaaaatttccaaaatttatggcagctttt
aaatttcctgcacttgaaaaaaccacgcgtttaataggggtaaatttacaagtaggaaga
agtggagtgatcactcctgtggcggttttagaacctgtaaatttagatggggttgtagta
aaatcagccacccttcataattttgatgaaattgcaagacttgatgttaaaatcaatgat
tttgtaagcgtgataagaagtggtgatgttattcctaagatcactaaggtttttaaagag
cgtagagaaggtttagagatggaaatttcacgccctaaactttgtcctacttgccaaagt
gagcttttggatgaaggaactttaataaaatgtcaaaatatagattgtgaagatagactt
gtaaattctatcattcattttgtttctaaaaaatgtcttaatatcgacggacttggagaa
aatatagtagaacttttatacaagcacaaaaaaatcactacgcttgagagcatttttcat
ttaaaatttagtgattttgaaggtttggaaggctttaaagaaaagaaaattaacaatctt
ttaaatgccatagagcaagccagagaatgtgagctttttcgttttatcacggctttaggg
atagagcatattggcgaggttgcggctaaaaaattaagtttaagttttggtaaagagtgg
cacaagcaaagttttgaagcttatgccaatttagaaggttttggagagcaaatggcttta
agtctttgcgaatttacgcgtgttaatcatacaagaattgatgaattttacaagctttta
aatttgaaaatagaaaaacttgaaatcaaaagtgatagtatgatttttggtaaaactttt
gtgattacaggtactctttcacgtccaagagatgagtttaaggctttgatagaaaagctt
gggggtaaggtaagcggctctgtttctaaaaagactgactatgtgctttttggagaagag
gcaggttctaaacttagcaaggctaaagagcttgaagtaaaatgtataaatgaaagtgct
tttaatgagcttgttaaagaatag
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