Dehalococcoides mccartyi BAV1: DehaBAV1_0571
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Entry
DehaBAV1_0571 CDS
T00518
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
deb
Dehalococcoides mccartyi BAV1
Pathway
deb03030
DNA replication
deb03410
Base excision repair
deb03420
Nucleotide excision repair
deb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
deb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DehaBAV1_0571
03410 Base excision repair
DehaBAV1_0571
03420 Nucleotide excision repair
DehaBAV1_0571
03430 Mismatch repair
DehaBAV1_0571
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
deb03032
]
DehaBAV1_0571
03400 DNA repair and recombination proteins [BR:
deb03400
]
DehaBAV1_0571
Enzymes [BR:
deb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DehaBAV1_0571
DNA replication proteins [BR:
deb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DehaBAV1_0571
DNA repair and recombination proteins [BR:
deb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DehaBAV1_0571
NER (nucleotide excision repair)
GGR (global genome repair) factors
DehaBAV1_0571
MMR (mismatch excision repair)
DNA ligase
DehaBAV1_0571
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DehaBAV1_0571
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
RNA_pol_A_CTD
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ABQ17156
UniProt:
A5FRL4
LinkDB
All DBs
Position
complement(553991..556033)
Genome browser
AA seq
680 aa
AA seq
DB search
MEDMFSPLIEVENLRREINRHNQLYYVQDNPEISDAQYDTLIRRLKELEEAHPELVTPDS
PTQRVGAEPLKAFGIVNHPYPLLSLANAFSDTELEAWYQRVKKLLGNIPFQIDCEPKMDG
LAVALTYRNGKFATGATRGDGFQGENITRNLRTIHSIPLNAEPNAPPVFEVRGEVYLSKN
GFAKLNRERADKGLPLFANPRNAAAGSLRQLDPSVTAERPLDIFIYALGYSEDSLLPDSH
WQILDYFSKIGFRINPLNRLVNTLEEAKEYYRQMAANRASLPYEADGVVFKVDSVSLQHR
LGDVGREPRWAIAYKFPAEQVMTRLKKIGISVGRTGTLNPFAVLEPVNVGGVVVKQAALH
NEDDILRKDIREGDTVIIQRAGEVIPEVVAPVLSKRNPESKPFRMEESLFNPNLNRTACP
VCGGEIYRPAGEAMHYCANVSCPAQFERQLEHFVSRGAMDIRGIGESLSVILAQQGLVKN
VSDLYYLTTADLLQLPRMGEKSADNIIDAIADSKTRPLDRVIFGLGVRHVGNETATLLSR
HYGNIWALAKTGLGELQTIPDIGDKIASSIVAYFSEEKNVAVIRRLEEAGVRLTSDQKPV
NKNMPFSGMEFVVTGKLESFSREEAQEKIRSLGGTAKDNVTKATNYLVVGADAGSKLTKA
RSMGVKELSEREFINMLEQS
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggaagatatgttttcccccttgattgaagtagaaaacctaaggcgtgaaataaaccgc
cataaccagctatattacgttcaggataatcctgaaatctctgatgctcagtatgacact
ttgatccgccgcctgaaagaactggaggaagcccaccccgaactggttaccccggactca
cccacccaaagagtcggggcagagccgcttaaagctttcgggattgtaaaccacccttat
ccgttactttctctggcaaatgctttttcagatacagaactggaagcttggtaccagcgg
gtaaagaaactgctgggcaatattccttttcagatagactgcgagcccaaaatggacggc
ctggcggtagcccttacctaccggaacggaaaatttgcaaccggtgctacccggggtgac
ggatttcagggtgaaaatattacccgaaacctgcggactatccattccatacctttaaac
gccgaaccaaacgcaccccctgtttttgaagtaaggggtgaagtatatctttccaaaaat
ggctttgccaaactcaaccgcgaaagggcggataaagggctgcccctttttgccaaccca
cgcaatgccgccgccggttcactccgccagcttgacccgtcagttacggccgaaagaccg
ctggatatatttatttatgctttaggatattcagaagacagcctgctgcctgacagccac
tggcaaatactggattatttcagcaaaattggctttaggataaatccacttaaccgcttg
gtaaacaccctggaagaagccaaagaatattaccgccagatggcagcaaaccgggcttca
ctgccttatgaagcagacggagtagttttcaaggtggactccgtctctctgcaacaccgg
ctgggggacgtaggtcgtgaaccccgctgggccatagcctataaattcccggctgaacag
gtcatgacccgcctgaagaaaataggcatatctgtaggccgtacaggtacattaaacccc
tttgccgtacttgagccggtaaatgtgggcggagtagtggtaaaacaggccgccctgcat
aatgaagatgatatactccgcaaagatatccgcgaaggagatacggtcattatccagcgg
gcaggtgaagtaatacctgaggtagttgcaccggtactgagtaaacgcaaccccgaatca
aaacccttcagaatggaagaatctctgtttaacccgaaccttaaccgcactgcctgcccg
gtgtgcggcggggaaatataccgccccgcaggcgaagctatgcactactgtgccaacgtt
tcctgccccgctcagtttgaacgccagcttgaacattttgtttccagaggggctatggat
atacgcggtatcggcgaaagcctaagcgtaatactggcacagcaggggctggtgaaaaac
gtatcggacctgtactacctgaccaccgctgatttactgcaactgccgcgtatgggtgaa
aaaagtgcggataatataatagacgccattgcagacagtaaaacccgcccgctggatagg
gtaatattcggtctgggtgtacgccacgtgggcaacgagaccgccaccctgctctcaaga
cactacgggaatatatgggcactggctaaaaccggtcttggtgaactgcaaactatacct
gatatcggtgacaaaatagccagcagtatcgtagcgtatttcagcgaagaaaaaaatgtg
gctgttatccgccgtctggaagaagcaggcgtacggcttacttcagaccagaaaccggta
aacaaaaatatgccattttccggcatggagtttgtagtcaccggcaagctggaaagtttc
agccgcgaagaagcacaggaaaaaatccgctcactcggcggtacagccaaggataacgtc
accaaagcaaccaactatttggtagtgggtgcagatgccggctccaagctgaccaaagcc
cgaagtatgggtgtaaaagagctttccgaacgggaatttataaatatgctggagcaatct
tga
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