Danio rerio (zebrafish): 553550
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Entry
553550 CDS
T01004
Symbol
tsen54
Name
(RefSeq) tRNA-splicing endonuclease subunit Sen54
KO
K15326
tRNA-splicing endonuclease subunit Sen54
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dre03016
]
553550 (tsen54)
Transfer RNA biogenesis [BR:
dre03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing endonuclease complex
553550 (tsen54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_int_end_N2
tRNA_int_endo_N
OCIA
Motif
Other DBs
NCBI-GeneID:
553550
NCBI-ProteinID:
NP_001018365
ZFIN:
ZDB-GENE-050522-454
Ensembl:
ENSDARG00000036844
UniProt:
Q504E6
LinkDB
All DBs
Position
3:60761770..60796503
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AA seq
397 aa
AA seq
DB search
MGFSERGKQYLQPEEALYLMECGNVQVFYRDLPLSIQDGYERFLSSDTVTLHQYQVFGHL
KRLGYVVNRFDPSSVSSTYERQLNLPASDKQKKQLKRKRSQSPVSSDKHGISTEEKTTSE
AHNELAETSKLPADLQEPVHLADAPERTWWMEEDVQQKHPKTQTAAPRWDFSSISFPDLG
SRRRSERLASPHRSLLPENVDVGECDVSRWLGRLNMKQEKLSRRDMERQRERDRYRWDVN
SDREVRRCRNWAEYSELMGERRRRRRKHRPEHLWEREETPLTQPGQCTSHRELLDQIGII
KSSTFSEGLSRLSPSDQWKISFDVYQPDTVAEFKKSHPGKPYTRMCVCSFAGPVPDLHAV
KQLSFQSQDVPVTFAVVDHGDISFYCFKDFKLPTDVY
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgggtttttcagaaagaggcaagcagtatctgcaacccgaagaggcgctctacctcatg
gaatgtggcaatgtgcaggtgttttaccgggaccttcctctgtccattcaggacggatat
gagcggtttctgtcctctgacactgtgactcttcatcagtatcaggtttttggacatttg
aaaaggcttgggtatgttgtgaacagatttgatcccagctcagtctcatccacatatgag
agacagctgaatctgccagcatcggacaaacagaagaaacagctgaagaggaaacgctct
caaagtcctgtgtccagtgataaacacggcatatcaacagaggagaagacgacatctgaa
gctcacaatgagctagcggagaccagtaaactaccagcagatctgcaggagccggtacat
ttagctgacgcacctgagaggacatggtggatggaggaggacgtccagcaaaaacaccca
aaaacccaaactgcagctccccgttgggacttcagcagcattagtttcccagatctgggc
tcccgcaggagatctgagcgtttggcgtctccacaccgcagcctgctgccggaaaatgta
gatgtgggtgaatgtgacgtgtcccgctggctgggcagactcaacatgaagcaggagaag
ctgtcgcggcgggacatggagcgacagagggagcgggacagataccgctgggatgttaac
agtgacagggaggtgcggcgctgcaggaactgggcagaatattcagagctgatgggggaa
cggaggaggcggaggagaaaacacagacctgaacacctgtgggagagagaggagacgccg
ctcactcagcccggacagtgcacatcacaccgtgaactgctggaccagatcggcatcatc
aagtcctctactttctctgagggtctttccagattgtccccgtcagaccagtggaagatt
agtttcgatgtttaccaaccagacacggtggcggagtttaaaaagagccaccctggaaag
ccttacacacgcatgtgtgtctgcagttttgcgggccctgtgccggatctgcatgcagtg
aagcagctctccttccagagccaggacgtcccggtgacattcgcagtggtggatcacggt
gacatctccttttactgcttcaaagactttaaacttccaactgatgtgtattaa
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