Dinoroseobacter shibae: Dshi_2997
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Entry
Dshi_2997 CDS
T00612
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dsh
Dinoroseobacter shibae
Pathway
dsh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dshi_2997 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsh03019
]
Dshi_2997 (pnp)
03016 Transfer RNA biogenesis [BR:
dsh03016
]
Dshi_2997 (pnp)
Enzymes [BR:
dsh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Dshi_2997 (pnp)
Messenger RNA biogenesis [BR:
dsh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Dshi_2997 (pnp)
Transfer RNA biogenesis [BR:
dsh03016
]
Prokaryotic type
tRNA degradation factors
Dshi_2997 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_2
Motif
Other DBs
NCBI-ProteinID:
ABV94730
RoseoBase:
Dshi_2997
UniProt:
A8LKE7
LinkDB
All DBs
Position
3159996..3162131
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AA seq
711 aa
AA seq
DB search
MFNQVKKTMEWGEDTLTLETGKIARQADGCVIATYGETSVMAAVTYARSQKPGQDFFPLT
VHYNEKYYAAGKIPGGFFKREARPTEKETLTSRLIDRPIRPLFVDGFKNEVLVICTVLSH
DLENDPDIVAMIAASAALTISGVPFMGPIAGARVGYEDGEYVLNPVVDDMHDLRNNPDQR
LDLVVAGTKDAVMMVESEAYELSEAEMLGAVKFGHEQMQPVIDLIIELAETAAKEPFDFQ
PADYSELYAKVKAAGEDQMRAAFAITDKQERVTAISAARDAILATLSDEEQTDPNLGSAL
KKLESSILRGDVVKNGRRIDGRALDTVRPIQSEVGILPRTHGSALFTRGETQGLVVTTLG
TGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRFGPPGRREIGHGKLAWRALQAVLPA
ATDFPYTIRLVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEEDGSYA
VLTDILGDEDHLGDMDFKVAGTEEGITSLQMDIKVAGITPEIMEKALEQAKAGRLHILGE
MSKALSEGRSQFSEHAPRIETMQIPTDKIREVIGSGGKVIREIVETSGAKVDINDDGIIK
IASANGEAIKKAYEMIHSIVAEPEEGKVYTGTVVKIVDFGAFVNFFGKRDGLVHVSQIEN
RRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEEIKKEAPAD
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgttcaaccaagtcaagaagaccatggaatggggggaagatacgctgaccctcgaaacg
ggcaagatcgcccgtcaagccgatggctgcgtcatcgccacctatggcgagacctccgtg
atggccgcagtgacttacgcgcggtcgcaaaagccggggcaggatttcttcccgctgacc
gtgcattacaacgagaaatactatgcggccggcaagatccccggcggcttcttcaagcgc
gaggcgcgcccgaccgagaaagagacgctgaccagccgtctgatcgaccggccgatccgc
ccgctgttcgtggacgggttcaagaacgaggtgctggtgatctgcaccgtgctgtcccac
gacctggaaaacgatcccgacatcgtggcgatgatcgcggcctcggcggcgctgaccatt
tcgggcgtgcccttcatgggcccgattgccggggcacgcgtgggctacgaggatggcgag
tatgtcctgaacccggtcgtggacgacatgcacgacctgcgcaacaatcccgaccagcgt
ctcgacctggtggttgcgggcaccaaggacgcggtgatgatggtcgaatcggaggcttat
gagctgtccgaggctgaaatgctgggcgcggtgaagttcgggcacgagcagatgcagccg
gtcatcgacctgattatcgagctggccgagaccgcggcgaaagagccgttcgatttccag
cccgccgattactcggaactctatgccaaggtcaaagcggctggcgaagaccagatgcgc
gccgccttcgcgatcaccgacaagcaggagcgggtcaccgcgatctctgcggcccgcgac
gcgatcctcgccacactgagcgacgaagagcagaccgatccgaacctcggctccgccctg
aagaagctggaatccagcatcctgcgcggtgacgtggtcaagaacgggcgccggatcgac
gggcgcgcgctggacacggtgcgtccgatccagtccgaagtgggcatcctgccccggacc
cacggctcggcgctgttcacgcgcggcgaaacgcagggcctggtcgtgaccacgctgggc
accggcgatgacgagcagttcatcgacgcgctgcatggcaacttcaaatccaacttcctg
ctgcactacaacttcccgccctactcggtcggcgaagtgggccgcttcggtcctccggga
cggcgcgagatcggccacggcaagctcgcatggcgcgctttgcaggcggttctgcccgcg
gcgacggacttcccctacaccattcgtctggtgtccgagatcaccgaatccaacggctcg
tcctcgatggcatcggtctgtggcgggtcgctgtccatgatggatgcgggcgttccgctg
aaggcccccgtggccggtgtggccatgggtctgatcctcgaagaggacggctcctacgcg
gtgctgaccgacatcctgggcgacgaggatcacctcggtgacatggacttcaaggtcgct
ggcaccgaagagggcatcacctcgctgcagatggacatcaaggtcgcgggcatcacgccc
gagatcatggagaaggcgctggagcaggcgaaagccgggcgtctgcatatcctgggcgag
atgtccaaggcgctgagcgagggccgctcgcagttctcggaacatgccccgcgcatcgag
accatgcagatcccgaccgacaagatccgcgaagtcatcggctccggcggcaaggtcatc
cgcgagatcgtggagacctcgggcgcgaaagtggacatcaacgacgatggcatcatcaag
atcgcgtccgctaatggcgaggcgatcaagaaggcctacgagatgatccattcgatcgtg
gccgagcccgaagagggcaaggtctataccgggaccgtggtgaagatcgtcgatttcggc
gccttcgtgaacttcttcggcaagcgtgacgggctggtgcatgtcagccagatcgaaaac
cgccgcctgaaccatccttcggacgttctgaaggaaggccaggaggtgaaggtcaagctt
ttgggcttcgacgatcgcggcaaggtgcgcctgtcgatgaaagtcgtggatcaggagacc
ggcgaagagatcaagaaagaagcgcctgccgactga
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