T number | T00612 |
Org_code | dsh |
Name | Dinoroseobacter shibae DFL 12 = DSM 16493 |
Category | Type strain |
Annotation | yes |
Taxonomy | TAX: 398580 |
Lineage | Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Dinoroseobacter |
Brite | KEGG organisms [BR:br08601]
KEGG organisms in the NCBI taxonomy [BR:br08610]
KEGG organisms in taxonomic ranks [BR:br08611] |
Data source | GenBank (Assembly: GCA_000018145.1 Complete Genome) BioProject: 17417 |
Original DB | JGI, RoseoBase |
Keywords | Denitrification |
Comment | Symbiosis with dinoflagellates. Synthesizes the vitamins B1 and B12 for which its host is auxotrophic. Capable of growing anaerobically using the alternative electron acceptors nitrate and dimethylsulfoxide. Capable of performing light-driven ATP synthesis using bacteriochlorophyll a in the presence of oxygen. Has the large number of extrachromosomal replicons. Synthesizes novel acylated homoserine lactone (AHL) compounds. Isolated from cells of Prorocentrum lima (benthic dinoflagellate).
|
Chromosome | Circular |
Sequence | GB: CP000830 |
Length | 3789584 |
Plasmid | pDSHI01; Circular |
Sequence | GB: CP000831 |
Length | 190506 |
Plasmid | pDSHI02; Circular |
Sequence | GB: CP000832 |
Length | 152970 |
Plasmid | pDSHI03; Circular |
Sequence | GB: CP000833 |
Length | 126304 |
Plasmid | pDSHI04; Circular |
Sequence | GB: CP000834 |
Length | 86208 |
Plasmid | pDSHI05; Circular |
Sequence | GB: CP000835 |
Length | 72296 |
Statistics | Number of nucleotides: 4417868 Number of protein genes: 4194 Number of RNA genes: 50
|
Created | 2007 |
Reference | PMID: 19741735 |
Authors | Wagner-Dobler I, Ballhausen B, Berger M, Brinkhoff T, Buchholz I, Bunk B, Cypionka H, Daniel R, Drepper T, Gerdts G, et al. |
Title | The complete genome sequence of the algal symbiont Dinoroseobacter shibae: a hitchhiker's guide to life in the sea. |
Journal | ISME J 4:61-77 (2010) DOI: 10.1038/ismej.2009.94 |