Dinoroseobacter shibae: Dshi_3042
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Entry
Dshi_3042 CDS
T00612
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
dsh
Dinoroseobacter shibae
Brite
KEGG Orthology (KO) [BR:
dsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dsh03016
]
Dshi_3042 (truB)
Enzymes [BR:
dsh01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
Dshi_3042 (truB)
Transfer RNA biogenesis [BR:
dsh03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Dshi_3042 (truB)
Prokaryotic type
Dshi_3042 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Motif
Other DBs
NCBI-ProteinID:
ABV94775
RoseoBase:
Dshi_3042
UniProt:
A8LL26
LinkDB
All DBs
Position
3210502..3211416
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AA seq
304 aa
AA seq
DB search
MGRRKKGRAVSGWIVIDKPAGLSSNAVVGKVRWAFDAQKAGHAGTLDPEATGVLAIALGE
ATKTVPFVTDALKAYEFTVRLGQATNTDDGEGEVTETSDARPSDDEIRAALPPFEGDILQ
VPPQFSAVKIDGERAYARARAGQEMEIAARPLYVDSLTFIARPDPDHVTLEMVCGKGGYV
RSIARDLGRALGCFGHVKSLRRTWSGPFELSDATPLETLEDLAKDPALDAHLMPLETGLA
DLPELPCTPEGAARMRNGNPGMVRASDAEYGETAWASYNGTAVAVGTYRAGELHPTRVFQ
HGAL
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atgggacggcgcaagaagggccgcgcggtctccggctggatcgtgatcgacaaacccgcg
gggctgagctccaacgcggtggtgggcaaggtccgctgggccttcgatgcacagaaggcg
ggccatgcgggcaccctcgaccccgaggcgacgggcgttctggccatagcactcggcgag
gcgaccaagaccgtccccttcgtgaccgacgcgctgaaggcctacgaattcaccgtgcgg
ctgggccaagccaccaacaccgatgacggcgaaggagaggtgaccgagaccagcgatgcg
cgcccctccgatgacgagatccgcgccgccctgccccctttcgaaggcgacatcctgcag
gttccgccgcaattctcggccgtgaagatcgatggggagcgtgcctatgcccgcgcccgc
gccgggcaagagatggagatcgcggcccgcccgctctatgtcgacagcctcaccttcatc
gcccgccccgaccccgaccacgtcacgctcgagatggtctgcggaaagggcggctatgtc
cggtccatcgctcgcgacctgggccgtgcgctcggctgcttcggccatgtcaaatccctg
cgccgcacctggtccgggcctttcgagctctccgatgcgactccgttggagacgcttgaa
gacctggccaaggacccggccctcgatgcccacctgatgcccctggagaccgggcttgcc
gacctgccggaattgccctgcacccccgagggggcggcgcggatgcgcaacggcaacccg
ggcatggtacgcgcctcggacgcggaatatggcgagaccgcctgggcctcttacaacggc
acggccgtggccgtgggcacctaccgcgccggggaattgcaccccacccgcgtgttccaa
cacggagccttgtga
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