Francisella salina: F7308_0975
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Entry
F7308_0975 CDS
T01560
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
frt
Francisella salina
Pathway
frt03030
DNA replication
frt03410
Base excision repair
frt03420
Nucleotide excision repair
frt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
frt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F7308_0975
03410 Base excision repair
F7308_0975
03420 Nucleotide excision repair
F7308_0975
03430 Mismatch repair
F7308_0975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
frt03032
]
F7308_0975
03400 DNA repair and recombination proteins [BR:
frt03400
]
F7308_0975
Enzymes [BR:
frt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
F7308_0975
DNA replication proteins [BR:
frt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
F7308_0975
DNA repair and recombination proteins [BR:
frt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
F7308_0975
NER (nucleotide excision repair)
GGR (global genome repair) factors
F7308_0975
MMR (mismatch excision repair)
DNA ligase
F7308_0975
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F7308_0975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
BRCT_2
RNA_ligase
HHH
Motif
Other DBs
NCBI-ProteinID:
AEI35902
UniProt:
F8GBY5
LinkDB
All DBs
Position
1000629..1002665
Genome browser
AA seq
678 aa
AA seq
DB search
MTPSDFISTDYKTLTKAQLKSYIDDLAEYLGEQSYLYHTIDKPVITDSDYDKLFRLLQDL
VDDNPQLKPSNSVLDRVGGDVLAGFETIKHKKKMTSLANVFSLEELRDFYDKIKYDIELE
CEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVR
GEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFS
KDFVHPETQFELMNLLQSFGFTISDNMFLAKNFSEVERYHHKMSHQRADLAYDIDGLVFK
VNNIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGG
VIVSNATLHNINEIKRKDIRVGDRVIVRRAGDVIPEVVKSLSQYRKPDAQMVEMPTNCPV
CDSAIENINDQAIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLGAKLIEQLVAADLIKY
PADIYKLNFEQLTGLERMGAKSSQNVLDSITKSKEPSLARFIFAIGIKDVGEVSSEALAN
HFGSLESFREAKFEQLIEINDIGEIIAKNIVSFWQDSLNVQIVDELLGNSISIQNPEKIE
QAHNESFTNKTIVITGTFENYNRTELTQLLKSMGAKVTSSVSKKTDMVICGDNAGSKLTK
AQQLGVEVILEEGLAGLI
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgactccgagtgattttatttctacagactataaaactttaactaaagcacaattaaaa
tcatatattgatgatcttgcagagtatctaggcgaacaaagctatttgtatcatactata
gataagccagttattactgactcagactacgataagttattccgattattacaagattta
gttgatgataatccgcagcttaagccatcaaactcagtattagatcgcgttggaggtgat
gttttagcaggatttgagactatcaagcataagaagaaaatgacatctctggcaaatgtt
tttagtctagaggaattgcgtgatttttatgacaagataaagtatgacattgagcttgaa
tgtgaacctaaaatggatggcttggctattagtatcttttataaaaatggtaagtttgat
tatgctgttacgcgtggtgatggtattcagggtgaaaaagtatccgaaaatgtcaaaacc
atccgtaatgtcccacttaaactaaatacttcaaatcctccagaagaactagaagttcgt
ggtgagattatcttagataagcaaagttttctatctcttaatgagtatatgcaaactcat
gagaataaaacctttgcaaatccgcgtaatgcagcagctggaagtattcgtatgcttgac
tcaaaagttgtagcaaagcgaccacttaagctttatagctatggtattggctacttttct
aaagactttgtacatcctgaaactcaatttgagcttatgaacctattacagagtttcggc
tttactatcagtgacaatatgtttttggcaaaaaacttctcagaagttgagaggtatcac
cataagatgagtcatcagcgtgctgatttagcttatgatattgatggtttagtttttaaa
gttaataatattaaactacaagatactattggctacactgctagagggcctaaatgggct
atagcatataagttcccagctgaagaggttgagtcagaagtgctaaatgtagagtttcaa
gttggtagaacaggagcaattaccccagttgcaagacttaagccagttgcagttggtggt
gtaatagtttcaaatgcaactttgcataatatcaatgaaatcaaacgcaaagatatccga
gtcggtgatagagtcatcgtacgtagggcaggggatgtaattccagaagttgtcaaaagc
ttatcacaataccgtaagcctgatgcacagatggttgagatgccaacaaattgtccagtt
tgtgattcagcaattgagaatatcaacgatcaggctatatatcgttgtacaggagggtgg
cattgtcaggctcaaactactgagcgcttgaagcacttcgtctcacgtaaagcaatggat
attgataagcttggagctaaactgattgagcaacttgttgctgcagatttgatcaagtat
ccagctgatatttataaactcaattttgagcaattgacaggcttagaaagaatgggtgct
aaatcatcgcaaaatgttttagactctattacaaaaagtaaagagccaagcttagcaaga
tttatttttgcaatagggattaaagatgttggtgaggtatcatcagaagctttagccaat
cattttggtagtttagaaagtttccgtgaagctaaatttgagcaattaatagagattaat
gatattggtgaaattattgctaaaaatattgtttcattttggcaagattccctaaatgta
caaattgttgatgaactattaggcaattctattagtatccaaaatccagaaaaaattgag
caagcacataatgagagttttacaaataaaacaattgtgattacaggaacttttgaaaac
tataaccgtacagaattgacacaacttcttaaatcaatgggtgcaaaagttacctcaagt
gtctctaaaaaaacggatatggttatttgtggtgataatgctggaagtaagcttaccaaa
gcacaacaattaggtgttgaagttattttagaagaagggttagcaggtttaatatag
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