Gasterosteus aculeatus (three-spined stickleback): 120832110
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Entry
120832110 CDS
T07457
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
120832110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gat03000
]
120832110
04121 Ubiquitin system [BR:
gat04121
]
120832110
03036 Chromosome and associated proteins [BR:
gat03036
]
120832110
Enzymes [BR:
gat01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
120832110
Transcription factors [BR:
gat03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
120832110
Ubiquitin system [BR:
gat04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
120832110
Chromosome and associated proteins [BR:
gat03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
120832110
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
120832110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
JHD
F-box-like
JmjC
F-box
Cupin_8
LRR_4
Motif
Other DBs
NCBI-GeneID:
120832110
NCBI-ProteinID:
XP_040054086
LinkDB
All DBs
Position
XIV:7046980..7064616
Genome browser
AA seq
1407 aa
AA seq
DB search
MAQAVETCAAPGRRLRSICRRLYDENEDLSDVEEITNIRGFSVEEKLVSDSYSATFVHFM
EGKDFSYEYVQRDALRTPLIFKEKEGLGLRMPDPEFTVSEIKGLVGSRRSVDVMDVSTQK
GSEMSMSQFARYYETPEEERDKLFNVISLEFSHTKLESLIKRPTVVDQVDWVDNMWPPDL
KQSQTEATNVISDMKYPKVQRVLHTVGVIHLMYCLMSVKGCYTDFHIDFGGTSVWYHVFK
GQKVFWLVPPTPHNLALYEDWVLSGKQSDLFLGDRADGCQRVGLEQGYTFFIPSGWIHAV
YTPVDTLVFGGNILHSFNIPMQLTIHEIENRTKVHSKFRFPFYFEICWYVLERYLHCLTK
RSYFSQELHKEPVLTDYETKGNTQSPSSDTRSRDTNEDSCDTRVREGQGDKPEKAAQEGP
CCPDSQRSQHLKAVLSVHSEDSCNPGSAPLESPQTPSDSSGSEATNKWMHLTEFELSGLR
KLVEKLELLPENKKCVPEGIENPQALLENMKVVLKEHADDDPKLAITGVPVVYWSTQMKP
RPPNRPKPKMAASPASAVKLSAGRGTSGARRRRTRCRKCEACLRTECGECHFCKDMKKFG
GPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEDEEEKFNLMLMECSICNEIVHP
NCLKVKDSNGVVNDELPNCWECPKCNHAGKTGKASKQKRGPGFKYASNLPGSLLKEPRLN
RDSKEDPDPPLLATATVNALTAASAVKRKAEREEIPKAREEEPAKKRPPLLSLDAVLRPR
PEENPLRKKRKLFDTHDEPVMVKKKKKLLKPDDPLTLKLLRQIKTENDQGDEEDDLEDHK
EDGFPLGRVYLKGKDEYDEEDQAQDNEGRGEKTVKKERDSSGAEDKATVLLSPLLRTSAA
RDGEQSSSSPTAAPSSDSGDAEERSSKLKARHQRRRLPSRELSKEFNREIPKTEECLPDQ
NHGSVKAEEGSANHNRRPLKNEDPVTNQDRKPLKTEESPADQSRRALKTEEGSGNHNRRP
LKTEDGAANQNHRPVKTEPEGEVEDQKPRWPLSSNGSGALGDWLRPREREADEAPRGFSP
PGWNRSAPIAPAAWPRPLPCRSPPKCVQMERHVIRPPPISPPPDRLPLADGEAHAMRREM
WMTVFGHLAHRDLCVCMRVCRTWNRWCCDKRLWKRVNLNRCKSITPLMLSGIIRRQPVAL
DLSWTNISKKQLGWLVNRLPGLRVLLLSGCSWVAVSALCTSSCPLLRTLDVQWVEGLKDA
QMRDLLSPPTDNRPGQLDNRSKLRNVEELRLAGLDITDTSLRLIIRYMPSLSKLDLSYCN
HVTDQSVNVLTAAGTTTRDSLTDINLSVCNRVTDQSLTYFKRCGSVCHIDLRYCKQVSKE
GCDRFIAEMSVSVQFELIEEKLLQKIS
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atggcccaggccgtggaaacgtgcgctgcacccggacgcaggctgcgctccatttgccga
aggttgtacgacgaaaacgaggatctgtccgacgttgaagaaattacaaacatccgaggt
ttcagtgtggaggagaagctcgtcagtgacagttacagcgccacgtttgtgcacttcatg
gagggtaaagacttctcttatgaatatgtgcagagggatgctctcaggaccccactcatc
ttcaaagagaaagagggactcgggctcagaatgcccgatccagaattcacagtcagtgaa
attaagggcttagttgggagtcgccggtccgtggatgttatggatgtgagcactcagaaa
ggctctgaaatgagcatgtctcagtttgcccgttattacgagacaccggaggaagagcgg
gacaaactgttcaacgtcatcagcttggagttcagccacactaaactggagagtctcatc
aagcgtcccacagtggtagatcaagttgactgggtggacaacatgtggcctcctgatctg
aagcaaagccaaacagaagccaccaatgtaatctcagacatgaagtacccaaaagtgcaa
agagtgctgcatacagtcggtgttatccatctcatgtactgtttgatgagcgtgaagggc
tgctacacagacttccacatcgactttggtggaacctccgtctggtatcatgtattcaag
ggtcagaaagtgttttggctcgtgcctccgaccccccataacctcgccctctacgaggac
tgggtcctgtcaggcaagcagagtgatctcttcctgggagaccgagccgacggatgccag
agagtgggacttgagcagggatacacgttcttcatcccatcgggctggattcatgccgtc
tacactccagtggacactctggtatttggaggcaatattctgcacagcttcaacattcct
atgcagcttaccatccatgagatagagaataggaccaaggtccattccaagttccgtttc
cccttctactttgagatatgctggtatgtcctggagagatacctgcactgcctcaccaag
cgctcgtacttctcccaggagctccacaaagagccggtgctgacggactatgagacaaag
ggaaacacacagagcccgtcgtccgacaccaggagccgggacacgaacgaggactcgtgt
gatacccgagtcagggagggccagggggacaaaccagagaaggctgcccaggagggcccc
tgctgtcctgacagccagaggagccagcacctcaaggctgttctctccgtccactccgag
gacagctgtaatcccggctccgcccctctggagtccccgcagacgccctcggactcttcg
ggctcggaggcaacaaataaatggatgcatttgaccgagttcgagctgagcggactcagg
aagctggttgagaagctcgagttgctccctgaaaacaaaaaatgtgttcccgagggaata
gagaacccccaagctctgctggaaaacatgaaggttgtcttaaaagaacacgctgatgac
gaccccaagttagcaatcactggagttcctgtggtctactggtcaacacaaatgaagccg
cggcctccaaaccggcctaaacctaagatggcagcttctcctgcatcagcagtcaagctg
tcggccggccggggaacatctggtgccaggaggagaaggacgcgctgccggaagtgtgaa
gcgtgcctgcggacggagtgcggagagtgccacttttgcaaagacatgaagaagtttggt
gggccgggccgcatgaagcagtcctgcatcatgaggcagtgcatcgcacccgtcctgccg
cacacagcggtgtgtctcgtctgtggagaggcagggaaagaggacacagtggaggatgag
gaggagaagtttaaccttatgctcatggagtgctccatctgcaatgagattgttcatcct
aactgtctaaaggtgaaagactcaaacggagtagtcaatgatgaattgccaaactgctgg
gagtgcccaaagtgtaatcatgctgggaaaacaggaaaagcctcaaagcaaaaaaggggg
ccaggatttaagtatgcctcaaaccttcccggttcgctgctgaaagaaccgcggctaaac
cgggactcaaaggaggatcccgacccgccgttgttggccacagcaaccgtcaacgctttg
accgccgcgtctgccgtgaagagaaaagcggagcgggaggaaatccctaaggcgagagag
gaagaaccggcaaagaaacgtcctccgctgctgtccctggacgctgtgctccgaccgagg
ccagaggaaaacccactacggaaaaagaggaagcttttcgacacccatgatgaacctgta
atggtgaaaaagaagaagaagcttttaaaacctgacgatcctttgactctcaagctgttg
cgtcaaatcaagacggaaaacgatcagggcgatgaagaagatgacctggaggatcacaaa
gaagatggattccctttgggcagggtttatttaaagggtaaagatgaatatgacgaagag
gaccaagcacaggacaacgagggacggggagagaagacagtgaaaaaagagagagacagc
agcggtgcagaggacaaagccacggtcctgttaagtccactgctaagaacatctgcagcc
agagacggcgaacagtcctccagctctcccacagcggcaccgagcagcgactcgggagac
gcagaggagaggagctccaagctgaaggctcgccatcagcggcgacgtctccccagcaga
gagctgagcaaggagttcaaccgagagatccccaagacggaagagtgcctccccgaccaa
aaccacggctcggtgaaggccgaggagggctcagccaatcacaatcgacgaccactgaag
aacgaggaccccgtgaccaatcaggaccgtaagccattgaaaacggaggagtcgcccgcc
gatcagagccgcagggcccttaaaacggaggagggctcgggcaaccacaacagacgcccg
ctgaaaacggaggacggcgcggccaatcagaaccacaggcccgtgaaaaccgagcccgag
ggcgaggtggaggaccagaagccccgatggcctctcagcagcaacggcagcggcgccctg
ggcgactggctgcgaccccgcgagagggaggccgacgaggcgccgcgcggcttctcgccg
ccgggctggaaccgaagcgcgccaatcgcgcccgccgcgtggccccgtccgctcccctgc
cggtcgccgccgaaatgcgtccagatggagcgccacgtgatccggcccccgcccatcagc
cccccgcccgatcggctcccgctggccgacggcgaggcgcacgccatgcgaagggagatg
tggatgacggtgttcggccacctggctcacagggacctctgcgtgtgcatgcgcgtctgc
aggacctggaacagatggtgctgcgacaagaggctgtggaagcgcgtcaatctgaaccgc
tgcaagtccataacgcccctcatgctgagcggcatcatccggaggcagccggtggctctg
gacctcagctggaccaacatctccaagaagcagctcggctggctcgtcaacaggctgcca
ggtttgcgtgtgctgcttttgtcaggctgctcctgggtggcggtctctgctctttgcacg
tccagctgtcctctcctgcgaactctggacgtccagtgggtcgagggactgaaagacgcc
caaatgagggacctgctgtcgcctcctacagacaacaggccaggtcagctggacaacagg
agcaaactgcgtaacgtggaggagctgcgcctggcgggcttggacatcacggacacgtct
ctgcgcctcatcattcgctacatgccgtcgctgtccaagctggacctcagctactgcaac
cacgtcaccgaccagtccgtcaacgtgctgaccgcggcggggacgaccaccagggactct
ctcactgacatcaacctgtcggtctgcaaccgggtcacagaccagtcgctgacctacttc
aagcgctgcgggagcgtatgtcacatcgacctgcgctactgcaaacaggtgagcaaggaa
ggatgcgaccgcttcatcgcggaaatgtctgtcagcgtgcagtttgaacttatagaagag
aagctgctgcagaagatcagttag
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integrated database retrieval system
