Helicobacter pylori F57: HPF57_0638
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Entry
HPF57_0638 CDS
T01912
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hex
Helicobacter pylori F57
Pathway
hex03030
DNA replication
hex03410
Base excision repair
hex03420
Nucleotide excision repair
hex03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HPF57_0638 (ligA)
03410 Base excision repair
HPF57_0638 (ligA)
03420 Nucleotide excision repair
HPF57_0638 (ligA)
03430 Mismatch repair
HPF57_0638 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hex03032
]
HPF57_0638 (ligA)
03400 DNA repair and recombination proteins [BR:
hex03400
]
HPF57_0638 (ligA)
Enzymes [BR:
hex01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HPF57_0638 (ligA)
DNA replication proteins [BR:
hex03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HPF57_0638 (ligA)
DNA repair and recombination proteins [BR:
hex03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HPF57_0638 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HPF57_0638 (ligA)
MMR (mismatch excision repair)
DNA ligase
HPF57_0638 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HPF57_0638 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
HHH_5
RabGAP-TBC
BRCT_2
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
BAJ59712
UniProt:
E6NRE6
LinkDB
All DBs
Position
complement(669305..671275)
Genome browser
AA seq
656 aa
AA seq
DB search
MIKSQKEYLERIEYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQSNSPTQ
KVGAITPNSFNKNPHLMRMWSLDDVFNQNELQTWLQRILKAYPSASFVCSPKLDGVSLNL
LYQHGKLVSATTRGNGLEGELVSTNAKHIANIPHAIAYNGEIEIRGEVIISKKDFDALNK
ERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGKHSLNFLSFKECLDFIVS
LGFNSIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKELGYTQKSPK
FACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLHNYSEIEKKN
IMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKICPICSHELLCEEIFTYCQNLN
CPARLKESLIHFASKDALNIQGLGDKVIEQLFEEKLIFNALDLYALKLEDLMRLDKFKIK
KAQNLLDAILKSKNPPLWRLINALGIEHIGKGASKTLAKYGLNVLEKSEAEFLEMEGFGV
EMARSLVNFYASNQEFIRSLFDLLNPKNSDMAKEKQESSSVFSHKTIVLTGTLSKPRQEY
AQMLENLGAKISSSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKHLKEFD
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgataaaaagccaaaaagaatatttagaaagaattgaatatttaaacaccctatcgcac
cattattacaaccttgatgatcccatcgtgagcgacgccgtctatgatgaactttatcaa
gaattaaaagcttatgaagaaaaaaaccctaatagcattcaatctaattcccctacccaa
aaagtgggggctattacccccaattcgttcaataaaaaccctcatttaatgcggatgtgg
agcttagatgatgtgttcaatcaaaatgaattgcaaacgtggttgcaacgcattttaaaa
gcctatcctagcgcttcgttcgtgtgttcgcccaaacttgatggggtttcgctcaatctt
ttgtatcaacatggcaagctagtgagtgcgaccactaggggcaacggcttagaaggggaa
ttggtgagcacaaacgctaaacacatcgctaatatcccccacgctatcgcttataatgga
gaaatagaaatcaggggcgaagtgatcatttctaaaaaggattttgacgctttaaacaaa
gagcgcttaaacgctaatgaacccctattcgctaaccctagaaatgccgcatcagggagt
ttgagacagcttgatagcgaaatcactaaaaagcgtaaattgcaattcattccttggggc
gtgggcaagcattctttaaatttcttaagctttaaggagtgtttggattttattgtttcg
ctaggttttaattctattcaatacttaagcctgaacaaaaaccaccaagaaatagaagaa
aattaccacaccctgattaaagaaagagagggcttttttgcccttttagacggcatggtg
atcgttgtgaatgaattaaatattcaaaaggagctaggctacacgcaaaaatcccctaaa
ttcgcttgcgcttataaattcccggctctagaaaaacacacaaaaattgtaggagtcatt
aaccaagtggggcgtagcggtgcgatcacaccagtcgctgttttagagcctgtagaaatt
gctggagctatcattacgaaagcgaccttgcacaattattctgaaattgaaaaaaagaat
atcatgctcaatgatagggttgtggttattagaagcggcgatgtaatccctaaaatcatc
aaacctttagaatcttatagggacggctcgcaacataaaattgaacgccccaaaatttgc
cccatatgttcgcatgagcttttatgcgaagagatttttacttattgtcaaaaccttaat
tgcccagcaaggttgaaagaaagcttgattcatttcgcttctaaagacgctttaaacatt
caaggcttgggcgataaagtcatagagcaactttttgaagaaaaactcatttttaacgct
ctggatttgtatgctttaaaattagaagatttaatgcggctagacaagtttaaaattaaa
aaagctcaaaatctattggacgctattttaaaaagcaaaaaccctcccttatggcgtttg
attaacgctttagggattgagcatatcggcaagggagcgagtaaaacgctggctaaatac
ggcttaaatgtgttagaaaaaagcgaagccgagtttttagaaatggaaggctttggggtg
gaaatggcgcgttctttagtcaatttttatgcgagcaatcaggaatttatccgatcgtta
tttgatttgttaaaccctaaaaacagcgatatggccaaagaaaagcaagaaagctcttct
gttttcagtcataaaacgattgttttaaccggcacgctttctaaaccacggcaagaatac
gctcaaatgttagaaaatttaggggcaaaaatttcttcaagcgtgagtgctaaaaccgat
tttttaatcgttggagaaaacgccggctcaaaactcgctctagcacaaaaacatggcgtg
agcgttttgaacgaagaagaattgttaaagcaccttaaagaatttgattga
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