Ictalurus punctatus (channel catfish): 108276785
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Entry
108276785 CDS
T04658
Name
(RefSeq) protocadherin gamma-C5 isoform X4
KO
K16497
protocadherin gamma subfamily C
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ipu04515
]
108276785
Cell adhesion molecules [BR:
ipu04515
]
Cadherins
Protocadherins
108276785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_tail
Cadherin_3
Cadherin_C_2
AGRB_N
BppU_N
Motif
Other DBs
NCBI-GeneID:
108276785
NCBI-ProteinID:
XP_017344229
Ensembl:
ENSIPUG00000019821
UniProt:
A0A2D0SNE8
LinkDB
All DBs
Position
16:3937277..4148070
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AA seq
972 aa
AA seq
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MDTLRINMRRKCWIAGLLYAFAVWNITKAQIRYTIPEEQNEGTVVGNIAKDLDLQLSDVF
ERNLRIAVESGKQYFGVDPTKGELVVKERIDRENLCGQSATCILTLEAIAENPLQLYRFE
IEIQDINDNSPVFQNKESTLNIAESTAPGARFRLESAQDPDVGSNSLRTYTLSKNEHFAL
DIKTEKDGAKVPELVLETSLDREKQPILSVLLTALDGGKPARSGTVQISVRVLDINDNAP
AFDQAQYDAQIAENASPGAVVVSVRAVDPDEGVNSEILYSFGPHTSEVIHNLFSVESISG
DIKVKNNIDYDTGSSFKFDIVAKDKGTPPMEGLCSVHVEVLDVNDNAPEILLKSFPSPVR
EDASVGTVVAFISARDLDTGDNGKVNLSLLPGTPFSLKSSMSNHYTLITAQKLNREAHSA
YTVVIVAADSGSPQLTSQQEILVNVLDVNDNAPVFTQTSYVAHVKENSAAGSILCSVSAS
DPDQGENAQISYSILDSRVLDAPLSSYVYINSDNGSIFSMHSFDHEKVKVFRIQVQAKDH
GSPSLSSNATVHVFIVDQNDNAPAIIYPSALMGSVSHQRMPRSAKAGHLVTKVTAVDADS
GHNAWISYRLAEATDASLFIVTLHTGEVRTKRSVTEQDDSSQRLLIEIKDNGEPLQSTTV
TVDILIEDGFHEPIADFRHKHTEPEKKNSKITLYLIISLASVSLLCLVTFLVLLVKCARS
SRGSSSCCIRRSDCEYKNPNRNLQIQLNTDGPIKYVEVLGGDMMSQSQSFGSYLSPMSEF
SDFTLVKPSSTTDFTNTLSVLDASLPDSTWTFECQQQKPPNNDWRLPPNQRPGPSGQHRF
HTLQQRWTPYEKSRAGARPEEAGAGAVVGTGPWPNPPTEAEQLQALMAAANEVSEATATL
GPRYNAQYVPDYRQNVYIPGSTATLTANPQQQMPQQALPPPQAPPQAAPTADVPKAAPTP
ASKKKVTKKDKK
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggatactttgaggataaatatgcgcagaaaatgctggattgccgggctgctctatgcg
ttcgctgtgtggaatattacgaaggcgcagattcgctacacaataccagaggagcaaaac
gagggcactgtggttggaaatatcgccaaagacctggatttacaattatccgacgtgttt
gaacggaatttgcggattgctgtcgagtctggtaagcagtattttggcgttgatccaaca
aagggcgaactggttgtgaaggagagaattgacagggagaatttatgcggccaaagcgcc
acttgtattcttacgcttgaggctattgcagagaatcctttgcagttgtatcgctttgaa
atagaaattcaggacattaatgacaattcgccggtttttcaaaataaagaaagcacgtta
aatatcgcagagtcaactgcgcctggtgcaagatttcgtttagaatcagcccaggatcct
gatgtgggatcaaattccctgcgcacttacacactgagtaaaaacgaacattttgcatta
gatataaaaactgaaaaagatggcgcaaaggtccccgagctggttttggaaacgtcccta
gacagagagaagcaaccgatactcagtgttttactaactgctttagatggggggaaacct
gctagatctggtactgtacaaatctctgttcgtgtcttagacataaatgacaatgctccg
gcttttgatcaggctcaatatgacgcacaaatcgccgaaaacgcatcaccgggagctgta
gttgtttcagtcagagctgtggatccagatgaaggagtaaacagtgaaatactctattcg
tttggaccacacacatctgaggtgatacataatttattttctgtcgaatccatctctgga
gacattaaggtaaaaaataatatcgattatgacacggggagctcctttaagtttgacatc
gtcgctaaagataaaggtactccgcctatggaaggtctttgtagcgtccatgtcgaagtt
ttggatgtgaatgataacgcaccagaaatcctcttaaaatcttttcctagccctgtgcgc
gaagacgcgtcagttggaacagtcgtagcgtttataagtgctagagatttggatacgggt
gataatggcaaggttaatctaagtttattaccaggcacgccgttctctttgaaatcttcg
atgtccaaccactatacactaatcacagctcaaaaactgaacagagaagcgcactctgca
tatactgttgtgattgttgctgctgattcaggatcaccacagctcacgtctcagcaagaa
atactcgtaaatgttttagatgtgaacgataacgcacctgtttttacgcaaacatcatac
gttgcccacgttaaagaaaacagcgctgctggatcaattttgtgttcggtgtcggcttct
gatccagatcagggagaaaatgctcaaatttcttattcgattttagactctagagtactc
gacgcaccactgtcatcttatgtctatataaattcagacaatgggagcatttttagcatg
cactcatttgatcacgaaaaggtgaaagtgtttcggatccaagtccaggcgaaagatcac
ggctctccgtctctgagcagcaacgccacggtacatgtttttattgtggaccagaacgac
aacgcccccgctatcatttacccctccgcactcatgggctccgtgtctcatcagagaatg
ccccgctccgctaaagcaggacacctcgttactaaagtcacagcagtggacgctgactcg
ggccataacgcctggatttcctatcggctagcggaggccacggacgcgtctctgttcatt
gtcactttacatacaggagaggtgaggactaagcgctctgttacagagcaggatgactcc
tctcagagactgctcatagagataaaggacaacggagaaccgctgcagtccaccacagtc
actgtggatatactgatagaggacggctttcatgaaccaatcgcagattttagacacaaa
cacacagaacctgagaagaaaaatagcaaaatcacattatatctcatcatttctcttgcc
tccgtgtcattgttgtgtttggtgacatttttggtcttgttggtaaaatgcgctcgaagc
agtagaggcagctcgagttgctgtatcagacggagcgattgtgaatataaaaaccccaac
agaaacctgcagatccagctcaacactgacggacccattaaatatgtggaggtgctggga
ggagacatgatgtctcagagtcagtccttcggctcgtatctctctccaatgtccgaattc
agtgatttcaccctcgttaaacccagcagcactacagactttacgaatactctgagcgtg
ctcgatgcgtctttaccggacagcacgtggacatttgagtgtcagcagcaaaagccacca
aacaatgattggcgcttacctccgaaccagaggcctggacctagtggccagcacaggttc
cacaccctgcagcagagatggactccatacgagaagtccagagctggagctcgtcctgaa
gaggctggtgccggcgcagtagtaggaacaggaccatggccgaatccccccacagaggca
gaacagctccaggctctgatggctgctgcgaacgaagtgagtgaagccacagcgactctc
ggtcctcgctacaatgctcagtacgtcccagactaccgacagaacgtttacatacctggc
agcaccgctacgctaacggctaacccacagcagcagatgcctcaacaggctctgccacct
cctcaggccccgccccaggccgctcccaccgccgacgtccccaaggctgccccgaccccg
gccagcaagaagaaggtcaccaagaaggacaagaagtaa
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