Lates calcarifer (barramundi perch): 108895890
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Entry
108895890 CDS
T04895
Name
(RefSeq) E3 ubiquitin-protein ligase Mdm2 isoform X2
KO
K06643
E3 ubiquitin-protein ligase Mdm2 [EC:
2.3.2.27
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04068
FoxO signaling pathway
lcf04110
Cell cycle
lcf04115
p53 signaling pathway
lcf04120
Ubiquitin mediated proteolysis
lcf04144
Endocytosis
lcf04218
Cellular senescence
lcf04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108895890
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
108895890
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108895890
09143 Cell growth and death
04110 Cell cycle
108895890
04115 p53 signaling pathway
108895890
04218 Cellular senescence
108895890
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
108895890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108895890
04121 Ubiquitin system [BR:
lcf04121
]
108895890
Enzymes [BR:
lcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108895890
Membrane trafficking [BR:
lcf04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
108895890
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
MDM2/MDM4 proteins
108895890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_3
SWIB
zf-RanBP
zf-RING_2
Rox3
PBP_sp32
Nucleo_P87
Motif
Other DBs
NCBI-GeneID:
108895890
NCBI-ProteinID:
XP_018550375
UniProt:
A0A4W6BVP5
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All DBs
Position
LG18:complement(12565771..12605833)
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AA seq
511 aa
AA seq
DB search
MSADGELSTDTSDDNKLVRPKVEFHSLLQHAGATKDVFTMKEVMFYLGQYIIQKQLYDQK
QQHIVHCSQDALGRVLGVDSFSVKEPRVLFAMITKNLVAVKSQESPPNSNEPHSNNQPER
GTEEADSESRSSSPDRRRRRRRRRRRRSCRSNEPGPSHSVEDDEDEEESDEEEEEEGKKR
RRSDSYSLTFDDSLSWCVIGGLGSGRDRHSSQSSDSHSTSGRSEVTVPASDSDSDNFSVE
FEVESIDSDDYNEDDASVSADDQVYEVTIFEAEDDDSFDEDTEITEADYWRCVRCDELNP
PLPRNCLRCWTLRQDWLPEVSNNISNSNPSGPKPLPTKPTIQSAAKEAPGSDVEENEGVD
VPDGKRAKTPLPLSQCLSDSTHSAPDSASSAPNSQDLSSSQPSSSYSSLDSQELLPFSPT
ASPPPPIPPPPLNAPAVPDLERSVSAEWRLPDSCLDPCLICQSRPKNGCIVHGRTGHLMS
CYVCARKLKKRNKLCPVCRLPIQSVVLTYLS
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgtcagctgatggggagctcagcaccgacaccagtgacgacaacaaactggtcagacca
aaggtagagttccattctttgctgcaacatgcaggagccactaaagatgttttcaccatg
aaggaggtgatgttctacctgggtcaatacatcatccagaagcagctgtacgaccagaag
cagcagcacatcgtccactgttcccaggacgcactggggcgggtactgggagtcgacagc
ttttctgttaaagagccacgagttctgtttgcaatgatcaccaagaacctggtggctgtg
aagagccaagaatcgccaccaaactcgaatgaaccacacagcaacaatcagccagagaga
gggacagaggaggcagattcagaaagtcgctcgtcatcaccagacaggaggaggcggcga
aggaggaggcggaggaggaggagctgcaggagcaacgaaccaggaccctcccacagtgta
gaggatgatgaagatgaggaagagtcggacgaggaagaggaagaagagggtaagaagagg
aggaggtctgacagctactccctgacgtttgatgacagcctgtcctggtgtgtgattggc
ggattgggaagtgggcgggacagacacagcagccaatcgtcggactcacacagcacatct
gggaggtcagaggtcacggtcccagcatcagactcagacagtgacaacttcagtgtcgaa
tttgaggttgagtccattgattctgatgattacaatgaagatgatgcctctgtgtctgcc
gatgaccaggtgtatgaggttacaatcttcgaggctgaggatgatgactcctttgatgaa
gacacagagatcactgaagctgactactggcggtgtgtgaggtgtgacgagttgaacccc
ccgctccccaggaactgtcttcgctgctggactctgcgccaggactggctgcctgaggtg
tcaaacaacatatctaactccaacccctccggtcctaaacctctgcccacaaagccaacc
atccaatcagcagccaaagaagctccaggttctgatgtcgaggagaatgaaggagttgat
gttcccgatgggaaaagagcaaaaactccccttcccttgtcacagtgtctgtctgactcc
acccactctgctcctgactccgcctcctctgctcccaactcccaggatctctcttcttcc
cagccctcctcctcctactcctccctcgactcccaagagcttctcccattttccccgacc
gcttcacctccacctcccattcctccacctccacttaacgcccccgcggtccccgacttg
gagcgcagcgtgtcagcggagtggcggctgccggattcgtgcctggacccctgtctcatc
tgtcagtcccggccgaagaacggctgcatcgtccacggacggaccgggcatctaatgtcc
tgctacgtctgtgccaggaagctgaagaagagaaacaagctgtgtccggtgtgcaggctg
cccatccagtctgtcgtccttacctacctcagctga
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