Latimeria chalumnae (coelacanth): 102353765
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Entry
102353765 CDS
T02913
Symbol
BRCA1
Name
(RefSeq) BRCA1, DNA repair associated
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
lcm
Latimeria chalumnae (coelacanth)
Pathway
lcm03440
Homologous recombination
lcm03460
Fanconi anemia pathway
lcm04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
102353765 (BRCA1)
09124 Replication and repair
03440 Homologous recombination
102353765 (BRCA1)
03460 Fanconi anemia pathway
102353765 (BRCA1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lcm01009
]
102353765 (BRCA1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcm04121
]
102353765 (BRCA1)
03036 Chromosome and associated proteins [BR:
lcm03036
]
102353765 (BRCA1)
03400 DNA repair and recombination proteins [BR:
lcm03400
]
102353765 (BRCA1)
Enzymes [BR:
lcm01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
102353765 (BRCA1)
Protein phosphatases and associated proteins [BR:
lcm01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
102353765 (BRCA1)
Ubiquitin system [BR:
lcm04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
102353765 (BRCA1)
Multi subunit Ring-finger type E3
BRCC complex
102353765 (BRCA1)
Chromosome and associated proteins [BR:
lcm03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
102353765 (BRCA1)
DNA repair and recombination proteins [BR:
lcm03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
102353765 (BRCA1)
BRCA1-A complex
102353765 (BRCA1)
BRCA1-B complex
102353765 (BRCA1)
BRCA1-C complex
102353765 (BRCA1)
BRCA complex
102353765 (BRCA1)
FA (Fanconi anemia) pathway
Downstream FA components
102353765 (BRCA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
BRCT_assoc
zf-C3HC4
zf-C3HC4_4
zf-C3HC4_2
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
BRCT_2
zf-RING_10
zf-RING_5
zf-Nse
zf-RING_6
zf-RING_4
zf-ANAPC11
zf-rbx1
TRAF3_RING
Motif
Other DBs
NCBI-GeneID:
102353765
NCBI-ProteinID:
XP_014352863
LinkDB
All DBs
Position
Un
AA seq
1965 aa
AA seq
DB search
MALSKCSIEEVQRVLSMMHKNLECPVCLELLREPISTKCDHRFCRFCISKLLNKKKKGAA
QCPLCKSEVTKSNVQESPRFKLLVEGLLKTIQAFEIDTGYACKYCKTVILVSWQEEQSKL
QLPDTMVIKVSQRNKQQKLNNRVVPIYLEAGSDSSEELLFKKKTNAESHCIMNSKAIECE
AHQEKVVERVEANCRNMKDDGDNTTCMVEAEELKVSTIVDHGFSDDDFASTFKRNGSFDG
ESGGEILSLTEDICGEDQCILDNNQEINASHENRDPVTNIGFSQSDGTSFITDANAWSIE
NGGKSKYSEMDKGQKYNLDESKGKLGVIKHLEEVNENYNVSSDLKETSFQKNEAQQKTFL
NNPLTVSKKRLKNSIEKVSEWLLKTDRVHPFNEESLYEQDISLEFTTKEKENQLSEEESC
TSYKTEIITLDISEKHDLSRSLIKQVPTNIEDQIFGKTYRREKKQNPHINWSVTSENKGI
TTSHLAKEFEIAKPSKLSLGKKNKRTLQLEPEDFIKTDLIKSKDQDKENLTEQINCLSNT
NNETEKDKGVSHHVIERTDDMQDGTKSVSHPNEKVVTTREIEKSTESLKENREQEKSEID
KESTLQSKKVIKKRSKSDGMRSTKTTRALKLVSHEEFQNLGKTMADANFLESPNLTELQI
DNYSSSEEPKRPEFEHKRTRRSRKLQLLAEETQKETSKSLQLCSNQPQEKSTLKGSEVPV
VPPKKATSSKGPEAGAVVESQGLVQPDLQQAVNNQTEEVVEIAQRLSSSFDSHQPYSVMC
SDEQDVQKDHNTGSQSTPPAVPNTESQRSTQNSASLLPVQSFSLVQQCREPKDHTELDQN
TVDQTFLHTLPSENNSICTKNKMPESITNEVQLKEKRFSEVGGNTETEDSETDIQCLLKT
FRSSKRKSFVLEPSPEQEYKDQGSTFTGEGLVRSKEMNNAESCAVKCASLGTEDHQQEVA
SVKKSVGSLGVSPQNDQVDACGQIDSVQYSDKSEVLPSLSGSNSSHELCVSPLEQTPCQL
VGKQKRMTKNSKLQNKMENIGTRTSVTMIQECFNQGSCDWENVGRKDLHGMDLNFKKELN
ERKEVNVATVSNAFGHNAGSALTSHSESMLLFSATSQLSNTKTSQEMKGNCNQRKSEFLV
KENKVVHNKSFATEKMKTSVEEEDEELVAKNIEEQMHKSSLKKTSSQSNLPKTQESSILA
VGPSATKASQSCSETPDGLLASLEEKKGGYDSNEVEVSESPGKVKETTVVHCKVSENEKE
EDRSSPNSGSQCFIQGKRRRQVQKLDPSESESESGDDEELPCFQALVSGKPISRTSASQE
SSTKIFSNKSKVQILSLPNSNNENDNVLDKKLLACSPRQENRSPSLSSEHSFDLFSSPPD
LSGSLSCVPQNKTPTTSPKQKKGSNICPKDGKLENERPEKNIVLLDEQEEKLKEVLIQHT
KLREMNTEHNPGEASGYESEASHTGDSSALSSQTEILNTQQKDAMQSDLQKLEHEMAVLE
AFLEQGAQVSESSILQVQENECPQQRVPGKEDQSIEKGNGSAKVTIVEQAANNTLKISSN
KHLMMLEDGCPETDCVHKAKLERECARSSTPPSIPSGSPMEENQTPEKVKATFDLLGKLK
AKAIHQATKITCDGQDQAEEEVKQTSQNRHELGRENLMEKQEQLQHSITVTLDGICRKDV
GLPKRQSPSQLPATKSPLQQLSGVMASPNVTQKQITDSNLKKAEHSKVMCSSISSTYSKG
VNIMNAKSPVVVNQRKMSIVASGLNKNELLLVQRFARKTQSMLSSQITSGTTHVIMKTDA
ELVCERTLKYFLGIAGRKWVVSYQWITESFQQGRILDEYDFEVKGDVINGKNHEGPRRAR
QMSNDKLLLRGYEICCYGSFSDMSPDQLEWMLKLCGACAVKEPYLFSYSPNQTAVLVVQP
DANSTTTDYRALQRKYNAMVVTREWILDSVACYRCQNLDAYLVYP
NT seq
5898 nt
NT seq
+upstream
nt +downstream
nt
atggctttgtctaaatgcagtattgaagaggtgcaacgcgtcctctcaatgatgcacaag
aacttggaatgtccagtatgtttagagttattgagagaacctatttcaacaaaatgtgac
catcgattctgcaggttttgtatttcaaaacttctcaacaaaaagaaaaaaggtgcagca
cagtgtccattgtgcaaaagtgaagttactaagagcaacgttcaagaaagtcctcggttt
aagctgcttgttgaaggacttttaaagactattcaggcctttgaaattgacacaggatat
gcatgtaagtattgcaaaaccgttattttggtttcctggcaggaagaacagtctaagttg
cagcttccagatactatggtcataaaagtatctcaaagaaacaaacagcaaaaactaaac
aaccgtgttgtgccgatataccttgaagctggctctgattcgtctgaggagctactgttt
aaaaagaaaaccaatgctgaaagtcattgtattatgaattctaaagctattgaatgtgaa
gcacatcaagaaaaagtagttgaaagagtagaagctaattgtaggaacatgaaggatgat
ggggataacactacttgcatggtggaagcagaagagctgaaagtatctaccatagttgat
catgggttttcggatgatgactttgcaagtactttcaagagaaatggatcctttgatggg
gaatctgggggtgaaattcttagcttgactgaagatatatgtggggaagaccagtgcatt
ttggataataaccaagaaattaatgcatcacatgaaaacagagaccctgtgactaatatt
ggtttctcacagagtgatggtacatctttcatcactgacgctaatgcatggagtattgaa
aatggtggtaagagcaagtattcggagatggataaagggcagaaatataatttagatgaa
tccaaagggaaacttggtgttataaagcacttggaagaggttaatgaaaattataacgta
agttcagatctaaaggaaacctcttttcagaagaatgaagcacagcaaaaaacatttttg
aataatcccttaacagtttcaaagaaaagactgaaaaacagtattgagaaagtaagcgag
tggcttttaaaaactgatagggtgcacccctttaatgaagagagcctttatgaacaagac
atcagtttggaatttacaacgaaagaaaaggaaaaccagctatcagaagaggagtcttgt
acttcctataagactgaaatcatcacattagacatttctgagaagcatgatctcagtagg
tctttaataaaacaagtgccaaccaatatagaagatcaaatctttggaaaaacatataga
agagaaaagaagcaaaatccacacatcaattggagtgttacttctgaaaataaaggcatt
accacttcccacttggctaaagagtttgaaattgccaaaccatctaaacttagcttaggg
aagaaaaacaaaaggacattacagctagaacctgaagactttatcaaaacagaccttatt
aaaagtaaagaccaggataaagagaacctcacagaacaaataaattgtttatctaataca
aataatgaaacagagaaagacaaaggtgtatcacatcatgtcattgaaagaacagatgac
atgcaggatggaactaaatctgtgtctcatccgaatgagaaagttgtgactacaagagag
attgaaaaatctacagaaagcctaaaagaaaatagggagcaagaaaagtctgaaattgat
aaagaaagcacattgcagtcaaagaaagtcatcaaaaagagaagcaagtctgatggaatg
cggtcaaccaaaacaactagagcactaaagttagttagtcatgaggaatttcagaatctg
ggtaaaacaatggctgatgcaaactttttagaaagtcctaatctgactgagctgcaaatt
gataattattcaagtagtgaagagccaaaaaggcctgaatttgagcataaaagaactagg
agaagcaggaagcttcagctacttgcggaagaaactcaaaaggaaacaagcaagagcctc
caactatgttctaaccagccacaggaaaaaagtactttgaaagggagtgaagttcctgtt
gtgccccccaaaaaggctacatctagtaaaggccctgaagctggggctgttgtcgaatcg
cagggtcttgtacaacctgatctgcagcaagctgtgaataatcagactgaagaagttgtt
gaaattgcacaaagattatcctctagttttgattcacaccaaccttactctgtgatgtgt
agtgatgaacaggatgtgcaaaaggaccataacactggaagccaaagcacacctcctgca
gttcccaatacagaatctcaaagatctactcaaaacagtgcgtcactgctaccagttcag
tcttttagtcttgttcaacagtgcagggagccgaaagatcacactgaacttgaccaaaat
acagttgatcaaactttcttgcatactttacccagtgaaaacaattctatatgcacaaaa
aataaaatgccagaaagcattactaatgaagtacaattgaaagaaaagagattttcagag
gtggggggtaacacagaaactgaagacagtgaaactgatattcagtgtttgttaaagaca
ttcagatcttctaaaagaaagtcatttgtacttgagcctagcccagagcaggagtacaaa
gaccagggttcaacctttaccggtgagggtctggtgagatccaaagaaatgaataacgct
gaaagttgcgcagtaaaatgtgcaagtcttggaactgaagaccaccaacaggaagttgca
tcagtaaagaagtcagttggttcgcttggagtaagtccgcaaaatgatcaggtggatgct
tgtggtcagattgattcagtacagtatagtgataaatctgaggtattgccttcactcagt
ggttcgaattcctcacatgaattatgtgtttctcccttggagcagacaccatgccaactc
gttggcaaacagaagagaatgaccaaaaacagcaagttacaaaataaaatggaaaatatt
ggaaccagaacttcagtgactatgattcaagaatgcttcaaccagggcagttgtgattgg
gagaatgttggcagaaaagatcttcatggaatggacttaaactttaaaaaggaactcaat
gaaaggaaagaagttaatgtagcaactgttagtaatgcatttggtcacaatgcaggatct
gcattaacttcacattctgaatcaatgcttttattttctgctactagtcaactaagcaac
acaaaaactagccaagaaatgaagggaaattgtaatcaaagaaaaagtgaatttctagtg
aaagaaaataaagttgttcataacaaatcatttgccacagaaaaaatgaaaactagtgta
gaagaggaagatgaggaactagttgccaaaaatatagaagagcaaatgcacaaaagcagt
ctaaagaaaacttcatcacagtctaatttgccaaagacacaagaaagctcaattttagct
gttggtcctagcgcaacaaaagcttcacagagctgttctgagacgccagatggtctactt
gcatctttagaagaaaagaaaggtggatatgatagtaatgaagtggaggtaagtgaaagt
ccaggaaaggttaaggaaaccaccgtagttcattgtaaagtgtctgaaaatgagaaggag
gaggacaggagttcaccaaactcggggtctcaatgcttcatccaaggaaagaggcggcgg
caagtgcaaaaactggacccatctgaatctgaatccgaatccggtgatgatgaagaattg
ccatgctttcaggccttagtgtctggaaaaccaataagtaggacatcagcgagccaggaa
agttctaccaaaatattttcaaataagtccaaggtacagattctttcacttccaaacagc
aacaatgaaaatgataatgttctggataaaaaattgctagcatgttcccccaggcaagaa
aatagatctccaagcctgagttcagagcactcttttgacttattttcttccccacctgat
ttgtcaggcagcttatcttgtgtaccacagaacaaaacgcccacaactagtcccaaacaa
aaaaaaggatccaatatctgtcctaaggatggtaaactggaaaatgagagaccagagaag
aacattgtacttctggatgaacaggaagaaaaattgaaagaagtgcttatccagcacacc
aaacttagagaaatgaatacagagcataatccaggagaagcatctgggtatgaaagtgaa
gccagtcacacaggagattcttctgcactttcctctcagactgaaattcttaacactcag
cagaaggatgccatgcagagtgacttacagaaactagagcatgaaatggctgtgcttgaa
gcattcttagaacaaggggcacaggtgtctgaatcttccatcctccaggtccaggagaat
gaatgccctcagcagagggtacctggaaaagaggaccaaagtatagaaaaaggaaatgga
tcagcaaaagtcacaattgtagagcaggcggcaaataacacattaaaaatttcatctaat
aagcacctaatgatgctggaggatggttgccctgaaacagactgtgtacacaaagcaaaa
ctagagagagaatgtgcaaggtcttcaactcctccatctatcccctctggttccccgatg
gaagagaaccaaactccagagaaagtgaaagctacctttgatcttctgggaaaactcaaa
gcaaaagccatccatcaggctacaaaaataacatgtgatgggcaggaccaagcagaggag
gaagtaaagcaaactagtcaaaacaggcatgaattaggtagagaaaatctgatggaaaag
caagagcaattgcagcatagtattacagtaaccctggatggaatttgtagaaaagacgtg
ggtttacccaaaagacagtccccttcccagcttccagcaacaaaatctcctttacagcag
ctttctggagtgatggccagccctaatgtgacccaaaagcaaattacagacagtaacctc
aaaaaagctgaacatagtaaagtgatgtgctcttctatatcatctacatacagcaaaggt
gttaatattatgaatgcgaagagtccagttgtggtgaaccagagaaaaatgtccattgtg
gcatctggcctaaataaaaatgagcttctactagtgcagaggtttgcaagaaaaacccag
agcatgttatccagtcaaataacatctggaactacccatgtcattatgaaaaccgatgct
gaattagtgtgtgaaagaacattgaaatacttcctgggtatagcaggcagaaagtgggtg
gtgagttaccagtggatcactgaatcttttcaacaaggaagaatacttgatgagtatgat
tttgaagtcaaaggtgatgtaatcaatgggaagaaccatgaggggcctagaagagcaaga
caaatgagcaatgacaagttgctgttaagagggtatgaaatttgctgttatggttcattt
tctgacatgagtccagatcagttggaatggatgttaaagttgtgtggagcctgtgccgtg
aaggagccttatttattctcctatagcccaaaccaaactgcagtgctggttgtgcagcca
gatgccaatagtacaacaacagactacagagcactgcagcgaaagtataatgcgatggtg
gtgactcgagagtggattctagatagtgtagcatgctaccgatgccaaaacttagatgca
tacctggtctacccatga
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integrated database retrieval system