Latimeria chalumnae (coelacanth): 102358103
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Entry
102358103 CDS
T02913
Gene name
THBS1
Definition
(RefSeq) thrombospondin 1
KO
K16857
thrombospondin 1
Organism
lcm
Latimeria chalumnae (coelacanth)
Pathway
lcm04115
p53 signaling pathway
lcm04145
Phagosome
lcm04350
TGF-beta signaling pathway
lcm04510
Focal adhesion
lcm04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
102358103 (THBS1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102358103 (THBS1)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
102358103 (THBS1)
09143 Cell growth and death
04115 p53 signaling pathway
102358103 (THBS1)
09144 Cellular community - eukaryotes
04510 Focal adhesion
102358103 (THBS1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcm04131
]
102358103 (THBS1)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lcm00536
]
102358103 (THBS1)
04990 Domain-containing proteins not elsewhere classified [BR:
lcm04990
]
102358103 (THBS1)
Membrane trafficking [BR:
lcm04131
]
Endocytosis
Phagocytosis
Opsonins
102358103 (THBS1)
Glycosaminoglycan binding proteins [BR:
lcm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102358103 (THBS1)
Domain-containing proteins not elsewhere classified [BR:
lcm04990
]
Thrombospondin domain-containing proteins
Thrombospondins
102358103 (THBS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
EGF_3
TSP1_ADAMTS
cEGF
TSP1_CCN
EGF_CA
EGF
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
102358103
NCBI-ProteinID:
XP_005988414
Ensembl:
ENSLACG00000018199
UniProt:
H3BFP1
LinkDB
All DBs
Position
Un
AA seq
1170 aa
AA seq
DB search
MKLPQGVFLLIMLVGLCGASRSLESGGDDNGVYDLFEITKATRKYYGVNLITGPDPSSPT
YKILNVDRIPPVPESIFLELLDQIQTERGFLLLATLKQLKGTRGSLLAVENQDQPGHVFD
ILSNGKAGTLDLTFTVDGKQHVVSLEEAKLATAHWKNITLFVQEDRAQLYVGCDKIENVE
LEAPIQKILHPSIASTTRLRLAKGNVKENNFQGSLSNVRFVFGTTLEAILRNKGCSSFST
ETIKLDNPVNGSSPAIRSNYIGHKIKNVCGFTCDELTEMFKEMKGLQSVITQLVEDLNNM
RQLNEMTGGRIGISQGTCIYKGNVHRENEEWTVDNCMECSCKNSATFCSKVSCPLVSCAN
ATVPDGECCPRCLPNDSAEDSWSPWSEWTPCSVSCGIGTQQRGRSCDRINNICLGPSVQT
RTCHIQECDKRFRQDGGWSYWSPWSSCSVTCGIGVKTRIRLCNSPTPQMGGRQCEGEGRE
TQECQKDPCPINGNWGPWSPWNTCTVTCGGGIQKHSRLCDSPMPKYGGKECVGEATATQI
CNKEDCPIDGCLSNPCFAGTKCTSFPDGSWKCGACPAGYQGNGVQCEDIDECKEVPDTCF
VFNGVHRCENTEPGYNCLPCPPRFNGLQPYGRGVEEATGNKQVCKPRNPCTDGTHNCNKH
ARCIYLGHYSDPMFRCECRPGYAGNGIICGEDTDLDGWPNQDLLCVANATYHCTKDNCPT
LPNSGQEDYDKDGIGDACDKDDDDDGIPDERDNCPLIFNPQQYDYDRDDVGDRCDNCPYN
HNPDQTDTDANGEGDACAKDIDGDGIPNERDNCPYVYNVNQKDTDWDGVGDQCDNCPLEN
NPDQTDSDSDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDDN
DGIPDDKDNCRLAFNPDQLDSDGDGRGDACKDDFDQDNVPDIYDVCPENFEISETDFRRF
QMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYDEFNAVDFSGTFFINTERDD
DYAGFVFGYQSSSRFYVVMWKQITQTYWDTTPTKAQGYSGLSIKVVNSTTGPGEHLRNAL
WHTGHTAGQVRTLWHDPRHTGWKDFTAYRWHLTHRPKTGYIRVVMYEGKKIMADSGAIYD
KTYAGGRLGLFVFSQEMVYFSDLKYECRDT
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgaagttacctcaaggagtatttctactcataatgttagtaggactctgtggagccagc
aggagcctagaatcaggtggagatgacaatggcgtttatgacctctttgaaatcacaaag
gctacacgcaaatattacggggtgaacttaattacaggtcctgacccttcaagcccaaca
tataagatccttaacgtagacaggatccccccagtgccagagtccatattcctagagttg
cttgatcagatccagactgaacggggcttcctcctcctggccaccctcaagcagctcaag
gggacccggggcagcctgctggcagtggaaaaccaggaccaacctgggcacgtcttcgac
atcttgtcaaacggtaaagctggaaccctcgatctcaccttcaccgtggacggcaagcag
catgtggtgtccctggaggaagccaagctggccacggcccactggaagaacatcaccctt
ttcgtgcaagaggacagagctcagctgtacgtgggctgtgacaagatcgagaacgtcgag
ctggaagcccccatccagaagatcctccaccccagcatcgccagcaccaccaggctcaga
ctggccaaaggaaatgtcaaagaaaacaactttcaggggtcgctctcgaacgtgcgattt
gtctttggaacaactttggaagcgatcctccggaacaagggctgctccagcttttccacc
gaaaccattaaactggacaacccagtgaatggctccagccctgcaatcagaagcaactac
attggtcataaaataaagaatgtctgtggcttcacctgcgatgagctgactgaaatgttc
aaggagatgaagggactccagtctgtgatcacccaactagtggaggacctcaacaacatg
aggcaattaaatgaaatgactgggggacggattggaatcagtcagggcacgtgcatttac
aaagggaatgttcacagagaaaatgaggaatggactgtggacaactgcatggaatgtagc
tgcaagaactcagcaacattttgcagtaaagtgtcctgcccccttgtgtcctgtgctaat
gccactgttccagatggagagtgctgcccacgatgcttgcccaatgactcagcagaagac
agctggtccccctggtcagaatggaccccctgttcagtttcctgcggaatcggcactcag
cagcggggccgatcctgtgaccgcattaacaatatctgtttgggcccctctgttcaaact
cgtacctgccacattcaggaatgcgacaagcgatttagacaagatggtggctggagttac
tggtccccatggtcctcctgctcagtgacctgtggcataggagtcaaaaccagaatccgt
ctctgcaactctcccaccccacagatgggtggccggcaatgtgagggagaaggcagagag
acacaggagtgccagaaggacccctgtcccattaatggaaactggggaccctggtcacca
tggaacacctgcactgtcacctgtggagggggcattcaaaaacacagtcgcctctgcgac
agccccatgcccaagtacggtgggaaagagtgtgttggggaggccaccgcaacccaaatc
tgtaacaaggaggactgtccaatcgatgggtgcctgtccaatccctgctttgctggaacc
aaatgcaccagtttccctgatggctcctggaagtgtggggcctgtccagctggttaccaa
ggaaatggtgttcaatgcgaagatattgatgagtgcaaagaggtgccagatacatgcttt
gtcttcaatggagtgcacagatgtgaaaacacagaacctggatataactgtctgccctgc
ccaccacgttttaatggattacagccctatggacgtggtgtggaagaggccacaggcaac
aaacaggtctgcaagcctcgcaacccttgcactgatgggactcacaactgtaacaagcac
gcccgctgcatctacctgggccactacagcgaccccatgttccgctgcgagtgcaggcca
ggctatgctggtaacggcatcatctgcggagaggacactgacctggatggctggcccaac
caagatctgctctgtgtggccaacgctacctaccactgcacgaaagacaactgccccact
ctgccaaattctggccaggaagactacgataaggatggaattggtgatgcctgtgacaag
gatgacgatgatgatggcattcctgatgaaagggacaactgcccgcttatcttcaaccca
cagcagtacgactatgaccgggatgatgtgggagatcgttgtgacaactgcccatacaac
cacaaccccgatcagacagacaccgatgccaatggagagggagatgcctgcgctaaagat
attgatggggatggtattccaaatgagagagataactgcccctacgtatacaatgttaac
cagaaggataccgactgggatggagtcggagaccagtgtgacaactgtcctttggagaac
aacccagaccagactgattctgactctgatcgtgttggagacaagtgtgacagcaaccaa
gatatagatgaagatggtcatcagaacaacctggataactgcccatacatccccaatgcc
aaccaggccgaccacgacaaggatggcaagggtgatgcctgtgaccatgatgatgataat
gatggtatccctgatgataaagacaactgcagactggcctttaaccctgaccagctcgat
tcagatggtgatggacgtggtgatgcctgtaaagatgactttgatcaggacaatgtacca
gatatctatgacgtctgtcctgagaactttgaaatcagtgaaactgacttccgcagattc
cagatggtgccccttgatcccaaaggcacatctcagattgatcccaactgggtggtgcgt
caccagggcaaagagctggtccagacagtcaactgcgaccctggcattgcagtcggatat
gatgagttcaatgctgtggactttagcggcaccttctttatcaacacggaacgtgatgat
gattatgctggttttgtcttcggctaccagtccagcagccgcttctatgtagtcatgtgg
aaacagatcacacagacctactgggatacaacaccaaccaaagcacagggctactcagga
ctgtccatcaaagtggtcaactccaccaccggccctggggagcacttacgtaatgccctg
tggcacactggacatacagcaggacaggttcgcactctatggcacgatcctcgtcacaca
ggctggaaagactttaccgcttacagatggcaccttacccacagaccaaagactggctac
attagagttgtaatgtatgaagggaagaagatcatggctgactcgggtgccatctatgac
aagacctatgctggaggtcggttaggtctcttcgtcttctctcaagaaatggtttacttt
tcagatctcaagtatgagtgcagagatacataa
DBGET
integrated database retrieval system
