Lactobacillus crispatus: LCRIS_00528
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Entry
LCRIS_00528 CDS
T01222
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lcr
Lactobacillus crispatus
Pathway
lcr03030
DNA replication
lcr03410
Base excision repair
lcr03420
Nucleotide excision repair
lcr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lcr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LCRIS_00528 (ligA)
03410 Base excision repair
LCRIS_00528 (ligA)
03420 Nucleotide excision repair
LCRIS_00528 (ligA)
03430 Mismatch repair
LCRIS_00528 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lcr03032
]
LCRIS_00528 (ligA)
03400 DNA repair and recombination proteins [BR:
lcr03400
]
LCRIS_00528 (ligA)
Enzymes [BR:
lcr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LCRIS_00528 (ligA)
DNA replication proteins [BR:
lcr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LCRIS_00528 (ligA)
DNA repair and recombination proteins [BR:
lcr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LCRIS_00528 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LCRIS_00528 (ligA)
MMR (mismatch excision repair)
DNA ligase
LCRIS_00528 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LCRIS_00528 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
zf-NADH-PPase
RNA_pol_A_CTD
bCoV_SUD_C
Motif
Other DBs
NCBI-ProteinID:
CBL49975
UniProt:
D5H1U0
LinkDB
All DBs
Position
530353..532359
Genome browser
AA seq
668 aa
AA seq
DB search
MAEITLDEAKKEAASLRKQLNEWAEAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIVTP
DSITQRVGGQIDSDFTKVEHPIPMLSMGDVFSKAELKDFDQRMQKLVGHPVEYNVELKID
GLSLSLEYENGKLVRASTRGNGYVGEDVTANAKYISDIPQTLPEPLTTEVRGECYMSKEA
FAKLNAEREEQGLAVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPPEEITSQHQA
IQKMHDLGFHTNETGRKLKILDEVFAFIDEYTAKRNSLTYGIDGIVLKIDDLGIEQELGN
TVKVPRWEIAYKFPPEEQETVVRDIVWTVGRTGVVTPTAVMDPVQLAGTTVARASLHNPD
YLNEKGIRIGDTVKLHKAGDIIPEISEVVMAKRPADSVAYQIPTTCPSCGQKLVHLEDEV
ALRCINPSCPAQVEEGITHFASRPAMNIAGLGPKIVKQLIAKDLVHNVADLYHLTADDLA
QLDHFKEKSINNLLTALDNSKQNSVELLITGLGIDHVGAKAARLIAQKFKNLAKIMSLDV
QEIASIDTIGMTIAESMTTYFAQPEAQKVIDELRESALNMDYLGADEPAEIEDNPFKDKT
VVLTGKLEHYTRSEFTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYTKAQTLGVPLLTE
EEAIAQIE
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaattactcttgatgaagctaaaaaagaagcggcttcacttagaaaacagctt
aatgaatgggctgaggcctattactctaaggacgcgcctgaggttgaagacaatgtttac
gaccaaagctacaaccgcttgcttgaattagaaaaagaatttccagagattgtgacaccc
gactccattacccaaagagttgggggacagattgatagtgattttaccaaggtagagcac
ccgattccaatgctgtcaatgggggacgtcttttccaaagctgaactgaaggattttgat
caacggatgcaaaaattagttggtcatccagttgaatataacgtggaattaaagatcgat
ggcttatcactatcgcttgaatatgaaaatggtaagttggttcgtgcctcaacgcggggt
aacggttatgttggtgaagatgtaacagctaatgctaagtatattagtgatattccacag
actttgcctgaaccgttaacaactgaagtgcgcggtgaatgttacatgagcaaggaagcc
tttgccaagttgaatgcagaaagagaagagcaaggtctagcagtttttgctaatccacgt
aatgctgcagcgggttctttgcgtcaacttgatcctaaagttaccaagaagcgtcaactt
agtacctttatttatacttgggttaatccgcctgaagaaattactagtcagcaccaagca
attcaaaaaatgcatgatttaggctttcataccaatgaaaccggtcgtaagttaaaaata
ttagatgaagtttttgcctttatcgatgaatacacagctaaacgaaacagcctaacatat
ggtattgatggcattgtgttaaaaattgatgatctaggaattgaacaagagctcggcaac
actgttaaggtgcctcgctgggaaattgcttataaatttccacctgaagaacaagaaact
gtagtgcgggatatcgtttggactgtcggccgtaccggagtagttactccaactgcggtc
atggatccggtgcaactagctggtacaactgtagctagggcttcattgcacaacccagat
tatttgaatgaaaaaggcatcaggattggtgataccgttaaactgcataaagcaggcgat
attattccagaaatctctgaagtcgtcatggctaaaagaccggcagattctgtagcttat
cagattccaacgacttgtccatcctgtgggcaaaaattagttcacctagaagatgaagta
gctttgcgctgcatcaatccatcttgtccagctcaagttgaggagggcattacgcacttt
gcttctcgaccagctatgaacattgccggtttggggccaaagatcgttaaacaattgatt
gctaaagatttagtgcataatgtggctgatctttatcacttaactgcagatgatttagca
caactcgatcattttaaggaaaaatcgatcaataatttgttaactgccttagacaattca
aagcaaaactcagttgaattattgattactggattgggaattgaccatgttggggccaaa
gcagcacgcttaattgctcaaaagtttaaaaatctggcaaagattatgtctctagacgtg
caagaaatagcttctatcgatacaataggcatgacgatcgcggaatcaatgacaacatat
tttgctcaaccagaagcacagaaggtaattgatgagctgcgtgagagcgccctgaatatg
gattacctaggtgcagatgagcctgcagaaattgaagataatccatttaaggataagact
gtagtgctaacaggtaaattagagcattatactagaagtgagtttacgaaaaaattacaa
gctttaggtgccaaagttacgggttcagtttcgcataagaccgattacgtgatttatggc
aaagatgctggttctaagtatactaaagcgcagactttaggcgtaccacttttgactgaa
gaagaagcaattgcacaaattgaataa
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