Schleiferilactobacillus harbinensis: D1010_03760
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Entry
D1010_03760 CDS
T06855
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lhb
Schleiferilactobacillus harbinensis
Pathway
lhb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D1010_03760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhb03019
]
D1010_03760
03009 Ribosome biogenesis [BR:
lhb03009
]
D1010_03760
Enzymes [BR:
lhb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D1010_03760
Messenger RNA biogenesis [BR:
lhb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D1010_03760
Ribosome biogenesis [BR:
lhb03009
]
Prokaryotic type
rRNA helicases
D1010_03760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QFR22632
UniProt:
A0A5P8M297
LinkDB
All DBs
Position
768098..769699
Genome browser
AA seq
533 aa
AA seq
DB search
MSRTLGLSGGTSSAHAFVRPIFRNGVPVFHTRRNYFLNFNELGLDPTLLKAISRAGFEEA
TPIQAGTIPLVLAGKDVIGQAQTGTGKTAAFGLPLLQKIDMNNRGVQAIVISPTRELAVQ
TQEELYRLGKDKHAKVQVVYGGADIRRQIRNLKEGPQIVVGTPGRLLDHLNRHTLKLEGV
HTVVLDEADEMLDMGFIEDIEKILTYVPNAHQTLLFSATMPGPIMRIADKFMHDPEVVKI
KSQELTADLIDQYYVRAREYEKFDVMTSLIDVQDPSLALIFGRTKRRVDELTRGLQARGY
NAEGIHGDLSQQKRMDVLKQFKHGQLDILVATDVAARGLDISGVSHVFNYDIPQDPDSYV
HRIGRTGRAGKHGVSITFVTPNEMGYLRTIEELTKKRMEPLKPPTEAEALAGQLASAKED
IVQTIADDDLEKYDDVAEELLEQYTPLQLVSAYLKSVSKDASDVKVTITPERPLPFRKAS
HHRSDKQGSQRHYGKNRNNNRRNDRDNKRGYSRGGSRSSDTKHNFKARSKTNA
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgaactttgggactttctgggggaaccagttccgcgcacgcattcgtgcggccc
atatttcggaacggggtccctgtttttcacacaaggaggaactattttttgaattttaat
gaactaggcttagaccccacactgctcaaggctatctcgcgcgccggcttcgaagaagcc
acccccatccaggcagggacgatccctctggtgttggcgggtaaggacgtcattggacaa
gcccagaccggtacggggaagacagccgcttttggtttgccgttattacaaaagatcgat
atgaacaaccggggcgtccaggccatcgtcatttctcccacgcgggaactggccgtgcag
acgcaagaagaactgtaccgcttaggtaaagacaagcacgccaaggtgcaggttgtttac
ggcggtgccgatattcgccggcagatccgcaacttgaaggagggtccccaaatcgttgtc
gggacgcccggccggctgctggaccacttgaaccgccacaccttgaagctggaaggcgtg
cacaccgtcgttctggatgaagcggatgaaatgctcgacatgggcttcatcgaagacatc
gagaagattctgacgtacgtcccgaatgcccaccagacactgctcttctcggccaccatg
ccaggaccgatcatgcgcatcgccgacaagttcatgcacgatccggaagtcgttaagatt
aagtcccaggaattaaccgctgatctgatcgatcaatattatgtgcgggcccgggaatat
gagaaattcgatgtcatgactagcctgatcgacgtgcaagatccttcattggccctgatc
tttggccggaccaagcggcgggtcgatgaactgacccgcggcttgcaagctcgcggttac
aacgccgaaggcatccatggcgacttgtcccagcagaagcggatggacgtcttgaagcaa
ttcaagcatggccaattggacattctggtggctactgacgtcgccgcccggggcttggat
atctccggtgtgtcccacgtcttcaactacgatattccccaagatccagacagctatgtc
caccggatcggccggacgggccgcgctgggaagcacggggtatcgattacctttgtgacg
cccaacgaaatgggctatctgcggacgatcgaggaattgaccaagaagcggatggaaccc
ctcaagccgccgacggaagctgaagccttagctggtcagctggccagtgctaaggaagac
atcgtgcaaacgatcgctgatgacgacttggagaagtacgacgatgtggcggaagaattg
ctggagcaatataccccgctgcaactcgtatcggcttacttgaagagtgtcagcaaggat
gcatcggatgtcaaagtcacgattacaccggaacggccactgccgttccgcaaggcatcg
catcaccgctctgacaagcagggcagccagcgccattacggtaagaaccggaataacaac
cggcgtaatgaccgggacaacaagcgcggctattcccgcggcggcagccggtccagcgat
acgaagcataattttaaagcccgttcaaagacgaacgcttaa
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