Leptospira interrogans serovar Linhai: LIL_13381
Help
Entry
LIL_13381 CDS
T03859
Symbol
lig
Name
(GenBank) NAD dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lis
Leptospira interrogans serovar Linhai
Pathway
lis03030
DNA replication
lis03410
Base excision repair
lis03420
Nucleotide excision repair
lis03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LIL_13381 (lig)
03410 Base excision repair
LIL_13381 (lig)
03420 Nucleotide excision repair
LIL_13381 (lig)
03430 Mismatch repair
LIL_13381 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lis03032
]
LIL_13381 (lig)
03400 DNA repair and recombination proteins [BR:
lis03400
]
LIL_13381 (lig)
Enzymes [BR:
lis01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LIL_13381 (lig)
DNA replication proteins [BR:
lis03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LIL_13381 (lig)
DNA repair and recombination proteins [BR:
lis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LIL_13381 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LIL_13381 (lig)
MMR (mismatch excision repair)
DNA ligase
LIL_13381 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LIL_13381 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_2
HHH
Motif
Other DBs
NCBI-ProteinID:
AJR15983
LinkDB
All DBs
Position
1:complement(4076967..4079012)
Genome browser
AA seq
681 aa
AA seq
DB search
MPKKKEDSQKTLSEKEAKGLIAKLSDEIRHHQYLYYVKNDPKISDFDFDQLFRRLQDLEE
EFPQFKDLASPTLVVGSDLDKDFEKFQHKLPVLSLINTYNDNELLEWVNKTDPEGLYSVE
WKIDGASIVLYYENGILKNGVTRGSGGIGDDVTDNIRTIRNIPLRLPEPITVYLRGEVFM
TFKDFEEFNALSSGKYANPRNLSAGSIKQKNSSDTAKRPLRIFTYDATFPNMEKKFKTHQ
EIFSKLEKLTFPVPPNTAFVSGSKIAKTIQEFKKQKDSLGFPTDGLVIKLNDISKRDALG
YTSHSPRWARAYKFDAIMKESKIVDITYAVGRTGKITPRAEIEPISLAGTTVTFATLHNQ
DYIDELGVGIGAIVRVAKRGEIIPAVEEVVTPGKEVFKIPDRCPSCNTQTIKKESLVDLF
CPNPDCPDRVKNGIIFYCQRKQMDIEGLGDKQIEFLYDHDYIKSIADLYDLKDQKEKLME
EEGFGEKSVNIILKGIEQSKQKDFRFLLPSLGLSELGHKVTELLIEHGIDSIDEILSIAK
DQKKIESLLEIPGIGPSTIQAFQENFSDKRILKLIERLKKAGLKMKADPIQVADQQPFAG
QSWCVTGSFENFQPRDKAMDLIVYYGGRKVSAVSSKTTHLLAGPGAGSKLEKANELGVSV
YDEKQFLDLLKSLKIDFKNLI
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgccaaagaagaaggaagactcccagaaaactctttcggagaaagaggccaagggactt
atagccaaactctccgacgaaatacgtcatcaccaatatctctattatgtaaaaaacgat
ccgaaaatttctgattttgatttcgatcagttattcaggcgacttcaagatttagaagaa
gagttcccgcagtttaaggatcttgcaagtcctactttggttgtaggttctgatttagat
aaggactttgaaaagtttcaacataaacttcctgtattatctcttatcaatacgtataat
gataatgagttattagaatgggtcaataagaccgatccggaaggattgtattccgtagaa
tggaaaatagatggggcttctattgtactatattatgaaaatggaattcttaaaaacgga
gttactagaggttccggcggaattggagatgatgttacagataatatccggactattcgg
aatattcctcttcgtttgccggagccgataacggtttatcttcgcggcgaagtttttatg
acttttaaagattttgaagaatttaacgcactttcttccggtaaatatgcaaatccgcga
aatttgtctgccggatctatcaaacaaaaaaattcctcggatacggcaaaacgtcctctt
aggatttttacttacgacgcaactttcccgaatatggaaaaaaaatttaaaacacaccaa
gaaattttttccaaactcgaaaagcttacgtttccagttccgcctaacacggcttttgtg
agcggatctaaaattgcaaaaaccatccaggaatttaaaaagcaaaaagattctttggga
tttccaaccgacggtcttgttatcaaactaaacgatatttctaagcgggatgcacttggt
tatacttctcattctcctcgatgggcaagagcgtataaatttgatgcaatcatgaaagaa
agtaagattgtagatataacttatgcagttggtcgaactggaaagattactcctagagcg
gaaatagaaccaataagtcttgcgggtactaccgttacatttgcgactcttcataatcaa
gattatatagacgaacttggagtagggatcggtgcgatcgtaagagtggcaaaacgtgga
gaaattattcctgcggtagaagaagtagttactcctggtaaagaagtttttaaaattccg
gatcgttgtccttcttgtaatacacaaacgattaagaaagaaagtttagtcgatctattt
tgtcctaatccggattgtcccgatcgtgtgaaaaatggaattatcttttactgtcagaga
aagcagatggatatagaaggactcggggataaacagatcgagttcttgtatgatcacgat
tatataaagtctattgcggacttgtatgatctgaaggatcaaaaagagaagttaatggaa
gaagaaggttttggagaaaagagtgtaaacattattctcaaagggatagaacaatccaaa
caaaaggattttcgttttttacttccttctcttggactctcggagcttggtcataaggta
acggaattgttaatcgaacacgggatcgattctatagacgaaattctttctattgcgaaa
gatcagaaaaaaatcgaatctcttttagaaattcctggaattgggccttctacaattcaa
gcttttcaggaaaatttttctgataaaagaattttaaaactaatagaacgtcttaaaaag
gcgggtcttaaaatgaaagcggaccccattcaggttgcggaccaacaaccgtttgcgggg
caatcttggtgtgtaaccggttcttttgaaaacttccagccaagagataaagcgatggat
ctgattgtttattatggtggaagaaaggtgagtgctgtaagttcaaaaactactcatctt
ttagctggacctggtgccggatctaaattagaaaaggcgaatgaacttggagtttctgtt
tatgatgaaaaacaatttttggatttgttgaagtctttaaaaattgatttcaaaaatctt
atttag
DBGET
integrated database retrieval system
