Limosilactobacillus reuteri TD1: N134_07940
Help
Entry
N134_07940 CDS
T02745
Name
(GenBank) DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lrr
Limosilactobacillus reuteri TD1
Pathway
lrr03030
DNA replication
lrr03410
Base excision repair
lrr03420
Nucleotide excision repair
lrr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lrr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
N134_07940
03410 Base excision repair
N134_07940
03420 Nucleotide excision repair
N134_07940
03430 Mismatch repair
N134_07940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lrr03032
]
N134_07940
03400 DNA repair and recombination proteins [BR:
lrr03400
]
N134_07940
Enzymes [BR:
lrr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
N134_07940
DNA replication proteins [BR:
lrr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
N134_07940
DNA repair and recombination proteins [BR:
lrr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
N134_07940
NER (nucleotide excision repair)
GGR (global genome repair) factors
N134_07940
MMR (mismatch excision repair)
DNA ligase
N134_07940
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
N134_07940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
5_3_exonuc
HHH
HHH_3
HHH_8
zf-NADH-PPase
Hydrolase_6
UPF0758_N
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
AGR64590
UniProt:
S5NQA7
LinkDB
All DBs
Position
complement(1637582..1639624)
Genome browser
AA seq
680 aa
AA seq
DB search
MSEKQTPVKELTLQEAQDEIKPLRAKLTKWGKEYYEQDNPTVEDHVYDRAYQRLVQLEEQ
FPQLVSADSPTQRVGGATESQLTKVRHEIPMLSMGDVFSIEELMDFNQRQQENREVEVEP
EYNLELKIDGLSLSLVYENGKLVQGSTRGNGTIGEDVTANVRTIKSVPAELPEPLSIEVR
GECYMPKAAFVKLNAKREAEGLPVFANPRNAAAGSLRQLDPKVTAQRGLDTFMYYVPEYQ
KLGVKTQAEALDRMRELGFNVNPNNRVVHNRGEIEEYIEEYTSQRDKLTYGIDGIVEKVN
DLDTEVALGNTVKVPRWEIAYKFPPEEQATIVRDIVWTVGRTGNVTPTAVMDPVQLAGTT
VSRASLHNPDYLSEKDIRIGDTVYLHKAGDIIPEISKVNLTKRPADSVKYEIPTKCPVCG
SELVHLDGEVALRCINPMCPAQIKEGLAHFASRNAMNIDGLGPRIIEQLWDKELIHDVAG
LYRLNHDQLLTLDKFGEKSTANLLTSINNSRNNSVERLLFGLGIRHVGAKAARIIMEHFG
DLDSLMKADADEISAISGIGPTIGESIVTYFANQQVVKLIDELREVGVNFAYLGSRSNAN
PDSEWNGRRVVLTGKLTEMTRGEAKSWLENHGAKVTGSVSKKTDIVIAGADAGSKLTKAQ
DLGIDIWNEQQFSQAMKEEQ
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaaaacagacgccagtaaaagaattaacccttcaagaagctcaagatgagatt
aagccattacgagcaaaattgaccaagtggggaaaagaatattatgaacaagacaatcca
actgtagaggatcatgtgtatgatcgtgcttatcagcgattagtacaactggaagaacaa
tttccccaattggtttctgctgattcgccaacccaacgagtaggaggagcaacagaaagc
caattaacaaaagttcggcatgaaattccgatgttatcgatgggggatgtcttttcgatt
gaagaattgatggactttaaccaacgacaacaggaaaatcgggaggtcgaagttgagccc
gaatataatcttgaactaaaaatcgatggtctttctctttcacttgtttacgagaatgga
aagttagttcaaggttctacgcgtggcaatggaacgattggtgaagatgttactgctaat
gtccgaactatcaagtcagttcccgcagaattgccagaaccattatcgatcgaggttcgg
ggcgaatgttatatgcccaaagcagcttttgtgaagttaaatgctaaacgcgaagcagaa
ggattgccagtttttgctaatcctcggaatgcggcagccggaagtttgcggcaactagat
ccaaaagtaacagcgcaacgtggactagatacatttatgtactatgttcctgaatatcaa
aagctaggcgttaagacccaagcagaagcacttgatcgtatgcgggaattaggttttaat
gttaatcctaataatcgggttgttcataaccgtggagagattgaggagtatattgaagaa
tatacttctcaacgagacaagctcacttacgggatcgatggaattgttgaaaaagtaaac
gaccttgatacggaagttgcccttgggaatacagttaaggtgccacgctgggaaattgcc
tataaattccctcccgaagagcaagccacgattgtccgtgatattgtctggactgtcgga
cggaccggcaatgtaacgccaacagcagttatggatccagttcaattggcgggcacaacg
gttagccgagcttctttgcataatcctgattacttgagtgaaaaagatattcggattggt
gatactgtttatctgcataaagcaggtgacattattcctgaaatttcaaaagtaaaccta
actaaacgtcccgcagattcagttaaatatgaaattccaacgaagtgtccggtctgtggc
tcagaattagttcatcttgatggggaagtagcattacgctgtattaatccaatgtgtcca
gcgcaaattaaagaaggtttagcacatttcgcttcccggaatgcaatgaatattgatggg
cttgggcctagaattattgaacagctatgggataaagaattgattcatgatgttgctggt
ttatatcgacttaatcatgaccaattattaactttagataaatttggcgagaaatcgacc
gctaacctattgacatcgatcaataatagtcgtaataattctgtcgagcgcttattattt
ggtcttggaattcgtcatgtaggtgcaaaggctgctcgaattatcatggaacatttcgga
gaccttgatagcttaatgaaggccgatgccgatgaaatttctgcgattagtggaattggg
ccaacaatcggcgaaagtatcgtaacttattttgctaatcaacaggttgttaaattaatt
gacgaactgcgagaagttggggtaaactttgcttatcttggctcacggtcaaatgctaat
cctgatagcgaatggaatggtcggcgagtagtactgactggtaagctaactgaaatgact
cgtggggaagcaaaatcatggcttgaaaaccacggagctaaggtaaccggaagcgtctca
aagaaaacagatattgtcattgctggggctgacgctggtagtaagctaacaaaagctcaa
gacttgggtattgatatatggaatgaacagcaattcagccaagcaatgaaggaggaacag
taa
DBGET
integrated database retrieval system
