Fructilactobacillus sanfranciscensis: LSA_04200
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Entry
LSA_04200 CDS
T01627
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase cshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lsn
Fructilactobacillus sanfranciscensis
Pathway
lsn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LSA_04200 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsn03019
]
LSA_04200 (cshA)
03009 Ribosome biogenesis [BR:
lsn03009
]
LSA_04200 (cshA)
Enzymes [BR:
lsn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LSA_04200 (cshA)
Messenger RNA biogenesis [BR:
lsn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LSA_04200 (cshA)
Ribosome biogenesis [BR:
lsn03009
]
Prokaryotic type
rRNA helicases
LSA_04200 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AEN98868
UniProt:
G2KU53
LinkDB
All DBs
Position
405137..406654
Genome browser
AA seq
505 aa
AA seq
DB search
MCCIYGDVSIGGTHLNFKDLGLSDSLLKAVADNGYAEPTAIQTETIPLTLKGEDVIGQAQ
TGTGKTAAFALPILQGIDVNDPNVQALVISPTRELAIQTQKEIQKLGRGEGVRAQVVYGG
SDIRKQIYDLKKKPQIIVGTPGRLLDHIKRRTLKLEHVKFLVLDEADEMLNMGFLEDIES
IIKNTPSDRQTMLFSATMPDPIKRVGVQFMTDPKQIKVKSKELTTDLVDQYYVKVKDNEK
FETMTRLFDVEQPKVTIVFCRTKRRVDEVAKGLIARGYKAAGLHGDLTQSRRTQIMNEFK
RDQINYLVATDVAARGIDVSGVTHVYNFDIPQDPESYVHRIGRTGRAGHHGTSVTFVTPN
EMSYLRLVEKLTKVRMLPLKPPTEDEALAGQMKFAIEDVDKLVKRTNTEKYEDVANTLLE
NHEAIDLVAALLNEMSRDQVKVHITPERPLKGHGGGRGRSRGGYRGNNSHSRGGYRGSRD
NNSRGGHDRRNSSGRSNKFVIKNKH
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atttgttgtatttacggtgatgtttcaataggaggaacacatttgaattttaaagattta
gggctatcagatagtctattaaaagccgtagcagataacggctatgcagaaccaactgct
atccaaacagaaacaattccattgacccttaaaggtgaagatgtgattggacaagcacaa
actggtactggaaaaactgctgcatttgcattaccaattctacaaggaattgacgttaat
gacccaaatgtgcaagcattagtaatttcaccaactcgtgaattagcgattcaaactcaa
aaagaaattcaaaagttgggtcgtggcgaaggtgtccgtgcacaagttgtttacggtgga
tcagacattcgtaaacaaatttacgatttaaagaagaaaccacaaattattgttggaact
cctggtcgtttacttgatcacattaaacgtcgtactcttaaactagaacatgtaaaattc
ttagttttagatgaagcagatgaaatgttaaacatgggattcttagaagatatcgaaagt
atcatcaagaacaccccctcagatcgtcaaacaatgttattctcagccactatgcctgat
ccaatcaagcgagttggggtacaatttatgactgatcctaaacaaattaaagttaaatct
aaagaattaacaactgatttagttgatcaatattacgtaaaagttaaagataacgaaaag
tttgaaacaatgactcgtttattcgatgttgaacaacctaaagtaaccatcgttttctgt
cggactaaacgtcgtgttgatgaagttgctaaaggtttgattgctcgcggttataaagct
gctggtcttcatggtgatttaactcaaagtcgtcgtactcaaattatgaacgaatttaaa
cgtgatcaaatcaattatcttgttgcaactgatgttgctgctcgtggaattgatgtttca
ggtgttacccatgtttataactttgatattcctcaagacccagaaagttatgttcatcgt
attggacgtactggtcgtgccggacatcatggtacttcagtaacctttgtaactccaaac
gaaatgagctaccttcgtttagttgaaaaacttactaaggttcggatgttaccattaaag
ccacctactgaagatgaagctttagctggtcaaatgaaatttgccattgaagatgttgat
aagttggttaaacggactaataccgaaaaatatgaagacgttgcaaatacattgctagaa
aatcatgaagcaattgatttagtagctgctttgttaaacgaaatgtcacgtgatcaagtt
aaggttcatatcactccagaacgtccacttaaaggacatggtggtggtcgtggccgtagt
cgcggagggtaccgtggtaacaacagtcatagccgtggtggatatcgtggtagtcgcgat
aacaatagtcgtggtggacatgatcgtcgtaacagctctggtcgtagtaacaaattcgta
attaaaaataaacattaa
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