Mus caroli (Ryukyu mouse): 110285425
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Entry
110285425 CDS
T05910
Symbol
Smarca2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03082
ATP-dependent chromatin remodeling
mcal04714
Thermogenesis
mcal05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110285425 (Smarca2)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
110285425 (Smarca2)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
110285425 (Smarca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcal03021
]
110285425 (Smarca2)
03036 Chromosome and associated proteins [BR:
mcal03036
]
110285425 (Smarca2)
Transcription machinery [BR:
mcal03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
110285425 (Smarca2)
Chromosome and associated proteins [BR:
mcal03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
110285425 (Smarca2)
Chromatin remodeling factors
BAF complex
110285425 (Smarca2)
PBAF complex
110285425 (Smarca2)
GBAF(ncBAF) complex
110285425 (Smarca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
110285425
NCBI-ProteinID:
XP_021007241
Ensembl:
MGP_CAROLIEiJ_G0022841
UniProt:
A0A6P5NYD9
LinkDB
All DBs
Position
19:23686908..23857609
Genome browser
AA seq
1602 aa
AA seq
DB search
MSTPTDPAAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPLSTM
GSADFPQEGMHQLHKPMDGIHDKGIVEDVHCGSMKGTSMRPPHPGMGPPQSPMDQHSQGY
MSPHPSPLGAPEHVSSPISGGGPTPPQMPPSQPGALIPGDLQAMNQPNRGPSPFSPVQLH
QLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGMQQQQQQQQQQQQQQQQQQQQPQQQQ
QQPQQPQQQAQAQPQQQQQQQQQPALVSYNRPSGPGPELLLSGQSTPQKLSAPAPSGRPS
PAPQAAVQPTATAVPGPSVQQPAPGQPSPVLQLQQKQSRISPIQKPQGLDPVEILQEREY
RLQARIAHRIQELESLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLET
ALNSKAYKRSKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRS
VAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAY
LLQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGEPALGPDGEPIDESS
QMSDLPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEESESDYEEEDEE
EESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAI
SERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLME
HKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLT
TYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKL
PELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLR
RLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNT
IMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHR
VLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRA
GGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAA
KYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREE
EFDLFMRMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGS
RQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPVKEDVEKAKKRR
GRPPAEKLSPNPPKLTKQMNAIIDTVINYKDRCNVEKVPSNSQLEIEGNSSGRQLSEVFI
QLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQI
YEDSIVLQSVFKSARQKIAKEEESEEESNEEEEEDDEEESESEAKSVKVKIKLNKKEEKG
RDTGKGKKRPNRGKAKPVVSDFDSDEEQEENEQSEASGTDNE
NT seq
4809 nt
NT seq
+upstream
nt +downstream
nt
atgtccacacccacagacccagcagcaatgccccatcctgggccctccccggggcctgga
ccctctcctggaccaattctggggcctagtccaggaccaggaccatccccaggttctgtg
cacagcatgatgggtcccagtcccggacctcccagcgtctcacatcctctgtcaacgatg
ggctctgcagacttcccacaggaaggcatgcaccaattacataagcccatggatgggata
catgacaaagggattgtagaagatgtccactgtggatccatgaagggcaccagcatgcgc
ccaccacacccaggaatgggccctccacagagccccatggaccagcacagccaaggttat
atgtcaccacatccgtctcctttgggagccccggagcacgtctccagccctatatctgga
ggaggcccaaccccaccccagatgccaccgagccagccaggggcactcatcccaggagat
ctgcaggccatgaaccagcctaacagaggtccctcgcctttcagtcctgtacagctgcat
cagcttcgagctcagattttagcttacaaaatgttggccagaggccagcctctccctgaa
actctgcagctggcagtccagggaaaaaggaccttgcctggcatgcagcagcagcagcaa
caacaacaacagcagcaacagcagcagcagcagcagcaacagcagccccagcagcaacaa
cagcagccccagcagcctcagcagcaggctcaggcacagccccagcagcagcagcaacag
cagcagcagccagctcttgttagctataatcgaccatctggccccgggccggagctactg
ctgagtggccagagcactccgcagaagctatcagcaccagcaccaagcggacgaccttca
cccgcaccccaggccgccgtccagcccacggccacagcagtgcccgggccctcggtgcag
cagcccgccccagggcagccatctccggtcctacagctgcaacagaagcagagccgcatc
agccccatccagaaaccgcaaggcctggacccggtggagatcctgcaggaacgagagtac
agacttcaggctcgcatcgctcataggatacaagaactggaaagtctgcctggttccttg
ccaccagatttacgcaccaaagcaaccgtggagctgaaagcacttcgcttactcaacttc
cagcgtcagctgagacaggaggtggtggcctgcatgcgaagggacaccaccctggagacg
gccctcaactccaaagcctacaagcggagcaagcgccagaccctgcgcgaggcacgcatg
acagagaaactggagaagcagcagaagatagaacaggagaggaaacgccggcagaaacac
caggaatacctgaacagtattttgcaacatgcaaaagattttaaggaatatcaccggtct
gtggctgggaagatccagaagctctccaaagcagtggcgacttggcatgctaacacagaa
agggagcagaagaaggagacagagcggatcgagaaggagagaatgcggaggctgatggct
gaagatgaagagggctaccggaagcttattgaccaaaagaaagacagacgcctcgcctac
ctattgcagcagaccgatgagtatgtcgccaatctgaccaacctggtttgggagcacaag
caggcccaagcagccaaagagaagaagaagaggaggaggaggaagaagaaggctgaagag
aatgcagagggaggggagcctgccctgggaccagatggagagccaatagatgaaagcagc
cagatgagtgacctgcctgtcaaagtgacacacacagaaactggcaaggtcctctttgga
ccagaagcacccaaagcaagtcagctggatgcctggctggagatgaatcctggttacgaa
gttgcacccagatccgacagtgaagagagtgaatcggactatgaggaggaggatgaagaa
gaagagtccagtaggcaggaaaccgaggagaagatactgctggatcctaacagtgaagaa
gtttccgaaaaggatgccaagcagatcattgagactgcgaagcaggatgtggacgacgaa
tacagcatgcagtacagtgccagaggctcccagtcctactacacggtggctcacgctatc
tctgagagggtggagaagcaatctgccctcctcattaatggcaccctaaagcattaccag
ctccagggcctggaatggatggtttccctgtataataacaatctgaacggaatcttagcg
gatgaaatggggctaggcaagacaatccagaccattgcactcatcacgtatctgatggag
cacaaaaggctcaatggtccctacctcatcatcgtccccctctcgactctgtctaactgg
acatatgaatttgacaaatgggctccttctgtggtgaaaatttcttacaagggtacccct
gccatgcgacgctcccttgttccccagctacggagtggcaaattcaatgtcctcctgact
acttacgagtacattataaaagacaagcacattcttgcaaagattcggtggaaatacatg
atcgtggacgaaggccaccgaatgaagaatcaccactgcaagctaacccaggtcctgaac
acccactatgtggcccccaggcggatccttctgactgggaccccactgcagaataagctg
ccggaactctgggccctcctcaacttcctcctccctacgatcttcaagagttgcagcaca
tttgagcagtggtttaatgctccatttgccatgaccggtgaaagggtggacctgaacgaa
gaagaaacgattttgatcatcaggcgtctgcacaaggtgctgaggccctttttactgagg
aggctgaagaaagaggttgagtctcagcttccggaaaaggttgagtatgtgatcaagtgt
gacatgtcagctctgcagaagattctgtaccgtcacatgcaagccaaggggatcctcctc
acagacgggtctgagaaagataagaaggggaaaggaggtgccaagacacttatgaacacc
atcatgcagctgagaaaaatatgcaaccacccatatatgtttcagcacattgaggaatca
tttgctgaacacctgggctattcgaatggggtcatcaatggggctgagctgtatcgggcc
tcaggaaagtttgagctgcttgatcgtattctgcccaaattgagagcgactaaccaccgc
gtgctgcttttctgccagatgacgtcactcatgaccattatggaggattactttgctttt
cggaacttcctgtacctgcgccttgatggcaccaccaagtctgaagatcgcgctgctttg
ctgaagaaattcaatgaacctgggtcccagtatttcattttcttgctgagcacaagagca
gggggcctgggcttaaatcttcaggcggcagacacggtggtcatctttgacagtgactgg
aatcctcaccaggatctgcaggcccaagaccgagctcaccgcattggccaacaaaatgag
gtccgggtgctgaggctttgcaccgtcaacagtgtggaggaaaagattctcgcggctgcc
aagtacaagctgaacgtggatcagaaggttatccaagcaggcatgtttgaccagaagtca
tccagccacgagcggagggccttcctgcaggccattctggagcatgaggaggagaatgag
gaagaagatgaggtaccagacgatgagaccctgaaccagatgattgctcgccgggaggaa
gagtttgatctttttatgcgcatggacatggaccggcggagggaggatgcccggaacccg
aagcgcaaaccccgcttgatggaggaagatgagctgccctcctggattatcaaggatgac
gccgaagtggagaggctcacctgtgaagaagaggaggagaagatatttgggaggggctct
cgccagcgccgggatgtggactacagcgatgccctcaccgagaagcaatggctcagggcc
atcgaagacggcaatttggaagaaatggaagaggaggtacggcttaagaagagaaaaaga
cgaagaaatgtggataaagaccccgtgaaggaagatgtggaaaaagcgaagaaaagaaga
ggccgccctccagcagagaagttgtcaccaaatccccccaaactgacgaagcagatgaac
gccatcatcgatactgtgataaactacaaagacaggtgtaacgtggagaaggtgcccagt
aattctcagttggaaatagaaggaaacagttcagggcgacagctcagtgaagtcttcatt
cagttaccttccaggaaagagttaccagaatactatgaattaattaggaagccagtggat
ttcaaaaagataaaggagcgaatccgtaatcataagtatcggagcctgggagacctggag
aaagatgtcatgcttctctgtcacaatgcacagacattcaacttggaaggatcccagatc
tacgaagactccattgtcctacagtcagtgtttaagagtgctcggcagaaaattgccaaa
gaagaagagagtgaggaagaaagcaatgaagaagaggaggaagatgatgaagaggagtcg
gagtcagaggcgaaatctgtgaaggtgaaaatcaagctgaataaaaaggaagagaaaggc
cgggacacagggaagggcaagaagcggccaaaccgaggcaaagccaaacccgtcgtgagc
gattttgacagtgacgaggagcaggaagagaacgaacagtcagaagcaagtggaactgat
aacgagtga
DBGET
integrated database retrieval system
