Mus caroli (Ryukyu mouse): 110292291
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Entry
110292291 CDS
T05910
Symbol
Col16a1
Name
(RefSeq) collagen alpha-1(XVI) chain isoform X1
KO
K24339
collagen type XVI alpha
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
110292291 (Col16a1)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
110292291
NCBI-ProteinID:
XP_029332630
Ensembl:
MGP_CAROLIEiJ_G0026538
UniProt:
A0A6P7R6X1
LinkDB
All DBs
Position
4:119860535..119911990
Genome browser
AA seq
1598 aa
AA seq
DB search
MLASWAPGLWMLGLWTTFSHGTNIGEQCPTSQQEGLKLEHSSDPSTNVTGFNLIRRLNLM
KTSAIKKIRNPKGPLILRLGAAPLTQPTRRVFPRGLPEEFALVLTVLLKKHTFRNTWYLF
QVTDANGYPQISLEVNSQERSLELRAQGQDGDFVSCIFPVPQLFDLRWHKLMLSVAGRVA
SVHVDCVSASSQPLGPRQSIRPGGHVFLGLDAEQGKPVSFDLQQAHIYCDPELVLEEGCC
EILTGGCPLETSKSRRDTQSNELIEINPQTEGKVYTRCFCLEEPQNSKVDAQLMGRSIQK
AERGTKVHQGTEVNECPPCAHSARESNVTLGPSGLKGGKGERGLTGPSGPKGEKGARGND
CVRVSPDAPLQCAEGPKGEKGESGDLGPPGLPGPTGQKGQKGEKGDGGLKGLPGKPGRDG
RPGEICVIGPKGQKGDPGFVGPEGLAGEPGPPGLPGPPGIGLPGTPGDPGGPPGPKGEKG
SSGIPGKEGPGGKPGKPGVPGTKGEKGDPCEVCPTLPEGSQNFVGLPGKPGPKGEPGDPA
PAWEGQGTVGLKGDRGDPGIQGMKGEKGEPCSSCSPGVGAQHLGPSPGHGLPGLPGTSGI
PGPRGLKGEKGSFGDTGPAGVPGSPGPMGPAGIKGAKGEPCEPCTALSGLQDGDIRVVHL
PGPAGEKGEPGSPGFGLPGKQGKAGERGLKGQKGDAGNPGDPGTPGITGQPGISGEPGIR
GPAGPKGEKGDGCTACPSLQGALTDVSGLPGKPGPKGEPGPEGVGRPGKPGQPGLPGVQG
PPGPKGTQGEPGPPGTGAEGPQGEPGTQGLPGTQGLPGPRGPPGSAGEKGAQGPPGPNGA
IGPMGPPGAGVSGPPGQKGSRGEKGEPGECSCPSRGEPIFSGMPGAPGLWMGSSSQPGPQ
GPPGVPGPPGPPGMPGLQGVPGHNGLPGQPGLTAELGSLPIEKHLLKSICGDCAQGQTAH
PAFLLEKGEKGDQGIPGVPGFDNCARCFIERERPRAEEARGDNSEGEPGCSGSPGLPGPP
GMPGQRGEEGPPGMRGSPGPPGPIGPPGFPGAVGSPGLPGLQGERGLTGLTGDKGEPGPP
GQPGYPGAMGPPGLPGIKGERGYTGPSGEKGESGPPGSEGLPGPQGPAGPRGERGPQGSS
GEKGDQGFQGQPGFPGPPGPPGFPGKAGAPGPPGPQAEKGSEGIRGPSGLPGSPGPPGPP
GIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPP
GSSGRPGAEGEPGAMGPQGRPGPPGHLGPQGPPGQPGPPGLSTVGLKGDRGVPGERGLAG
LPGQPGTPGHPGPPGEPGSDGAAGKEGPPGKQGLYGPPGPKGDPGPAGQKGQAGEKGRSG
MPGGPGKSGSMGPIGPPGPAGERGHPGSPGPAGNPGLPGLPGSMGDMVNYDDIKRFIRQE
IIKLFDERMAYYTSRMQFPMEVAAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQG
LPGMRGLPGTKGEKGDIGVGIAGENGLPGPPGPQGPPGYGKMGATGPMGQQGIPGIPGPP
GPMGQPGKAGHCNPSDCFGAMPMEQQYPPMKSMKGPFG
NT seq
4797 nt
NT seq
+upstream
nt +downstream
nt
atgttggcatcctgggctcccggcctgtggatgctcgggctctggaccaccttcagccat
gggacaaatataggtgagcagtgcccaacttcacagcaagaaggactcaagctagaacac
agtagtgacccatcaaccaacgtgactggcttcaacctaatccgccgactgaacctcatg
aagacatctgccatcaagaagatccgcaaccccaaggggccactcatcttgaggctgggg
gctgccccactgacccaaccaactcgacgagtgttccctcgaggcctcccagaggagttt
gccctggtcctgacagtccttctgaagaaacacaccttccggaacacatggtacttgttc
caagtgactgatgcaaatgggtacccgcagatctccttggaagtcaacagccaggagcgg
agtctagagctccgggcacagggccaagatggtgactttgtgtcctgcatcttcccagtg
ccccagctcttcgatctgcgttggcacaaactgatgctgagcgtggcaggccgtgtggcc
tctgtgcatgtggactgcgtctcagcttcctcccagcctctggggccccggcaatccatc
cggcctgggggacatgtatttctgggcttggacgctgagcagggcaagccggtttcattt
gaccttcagcaggcgcacatctactgtgacccggagctggtactggaggaaggctgctgt
gagatcttaacgggagggtgtcccctagagacctccaagtcacgccgggacacccagagc
aatgagctcattgagatcaatcctcagacagagggcaaggtctacacccggtgtttctgc
ttggaggaacctcagaacagcaaggtggacgcacagctcatgggaagaagcatccagaaa
gcagaaagggggacaaaggtccaccaggggactgaagtcaatgagtgcccaccctgtgcc
cacagtgcccgggagagcaatgtcacacttggtccctctggcctcaagggagggaaaggc
gaacgaggcctgactggaccatcaggccccaagggagagaagggagcacggggcaatgac
tgtgttcgagtgtcccctgacgccccacttcagtgtgcagaaggcccgaaaggagagaag
ggagaatcgggggacttgggacccccaggactcccaggaccaacaggccagaagggccag
aaaggggagaagggcgatggaggcctcaaaggactgccaggaaagccaggacgagatggc
cggccaggagagatctgtgtcattggacccaaagggcagaaaggagacccaggctttgtt
gggcctgagggactggcaggagagcctgggccacctggcctccctggaccacctgggata
ggactgcctgggactcctggagatccaggtggcccaccaggccctaagggagaaaagggc
agctctggaataccaggaaaggaaggcccaggagggaagccggggaagccaggagtgcca
gggactaagggagagaagggtgatccctgtgaagtgtgcccaacgctgcctgaagggtcc
cagaattttgtggggctccctggaaaaccagggcctaaaggggaaccaggtgatcctgct
ccagcctgggagggccaaggaactgtgggactgaaaggtgaccggggagatccaggcatc
caaggaatgaaaggagagaagggggagccctgctcatcctgtagtccaggggtcggggcc
cagcatcttgggccctctcctggacatggtttacctggtcttccgggcacatctggaatt
cctgggccaagaggcctgaaaggggagaagggtagttttggtgatacaggaccggctgga
gttccgggatcaccaggaccaatgggaccagctggcatcaaaggggcaaagggggagccg
tgtgagccctgcacagccttgtctgggctacaagatggggacatacgtgtggttcatctg
cccggcccagctggagagaagggagagcctgggtccccgggcttcgggctgcctgggaag
cagggtaaagcaggagagcgtggactcaaggggcagaagggggatgctgggaatccagga
gaccctggaacaccaggcatcacggggcagcctgggatatctggagagcctgggattcgg
ggtcctgcaggaccaaaaggagaaaagggtgatggatgcactgcctgccctagcctgcag
ggggcgttgaccgatgtatcgggactgcctgggaaacctggccccaaaggagagccaggt
ccagaaggtgtgggccgtcccggtaaaccaggccagcctggtctaccaggagttcaaggg
cccccaggaccaaaaggcactcagggagagcctggacctccaggcaccggtgctgaggga
ccccagggggagcctggaacccagggtttgcctggcactcagggccttcccggacctcgg
ggaccacctggctcagctggggaaaagggtgcccagggacctccagggcccaacggagcc
ataggacccatgggacctcctggtgctggtgtctcggggcctccgggccaaaagggatca
cgaggcgagaaaggtgaaccgggagagtgttcctgcccttctcggggagagcccatcttc
tcgggcatgccgggtgctccgggactgtggatgggcagctcctcgcagccgggcccgcag
ggtcccccaggtgtccccggaccaccaggtccccccggcatgcctggattgcagggagtg
cctggacacaacggtttgccaggacagcccgggctcactgccgagctgggatccttaccc
atcgagaaacacctcctcaagagcatctgtggtgactgtgcccagggccagacggctcat
ccagccttccttctggagaaaggagaaaagggggaccagggcatccctggcgtgccaggt
ttcgacaactgtgccaggtgcttcatagagagggaacgcccaagagctgaggaggccagg
ggagacaacagtgagggagaacctggctgttctgggagccctggcctgcctggtcctcca
gggatgccaggccaaagaggagaagagggtccacctggcatgaggggctctcccggtcct
ccaggccctattggccccccaggttttcctggtgctgttggctcccccggattgcccggg
cttcaaggggagcgaggcctcacgggcctgactggagacaaaggagaaccgggtcctcca
ggacaacctggctacccaggtgccatgggccccccaggactgcctggtatcaagggagag
cgaggatacactggcccctcgggagagaagggcgagtcgggcccaccaggatctgaaggc
cttccaggtccccaaggtccagcgggtccccgaggagagcgaggcccccaggggagctct
ggagagaagggcgaccagggatttcaaggccagccaggcttcccaggcccaccgggccct
cccggattcccaggcaaagctggagctcctggcccacctggcccccaagcagagaagggc
agtgaagggattcgaggtccctcaggcttgcctgggtcccctgggccaccaggccctcct
gggattcagggccctgctgggctggacggactggacgggaaggacggcaagcctggcctg
aggggagacccaggtcccgctggccctcccggactcatgggacctccaggcttcaagggg
aaaacaggtcatcccggcctccctgggcctaagggtgactgtggaaaacccggtcctcct
ggcagcagtggccggccaggggcagagggtgagcccggtgccatgggaccccagggacga
ccaggacccccagggcatcttgggccacagggtcctccaggccagcccggtccacctggg
ctctccaccgtgggcctgaaaggagatcgtggagtccctggagaaaggggcttggcgggc
ctcccaggccagcctggcacacccggacaccccggccctccaggtgagcctggttcggac
ggtgcagctggcaaagagggacctcctggaaagcagggactctatggacctcctggccca
aagggtgaccctggacctgcaggacagaagggccaagcaggagaaaagggaagatctggc
atgccggggggtcctggcaagagcggctccatgggacctattggaccaccggggcctgca
ggagagagaggtcaccctgggtccccagggcctgcagggaaccctggattgcctggcttg
ccgggctctatgggagacatggtgaattatgatgatatcaagaggtttatcagacaagag
atcattaaactgtttgatgagaggatggcttactatacctccaggatgcagttccccatg
gaggtggcagcagctccaggccggccagggcctccggggaaggatggtgctccaggtcgg
ccaggtgctccagggtcacccgggctccctggtcagataggccgagaaggacgccagggt
ttgccaggaatgagaggactgcctggtaccaaaggtgaaaagggagacattggtgttggc
attgcaggagaaaatggtctccctggccctccaggtcctcaagggcctccaggttatggc
aagatgggtgcaactgggccaatgggccagcaaggcattcctgggatccctgggcctccg
ggtcccatgggccagccagggaaggcaggccactgcaacccctcagactgctttggggcc
atgccaatggagcagcagtacccacccatgaagagcatgaaggggcctttcggctga
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integrated database retrieval system
